PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17301-17350 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | map_l150_m1_e0 | homalt | 99.4842 | 99.2194 | 99.7504 | 65.7675 | 11185 | 88 | 11190 | 28 | 25 | 89.2857 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.7964 | 99.8426 | 99.7503 | 54.7629 | 27915 | 44 | 27963 | 70 | 23 | 32.8571 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.4004 | 63.2326 | 99.7503 | 28.0442 | 5168 | 3005 | 5193 | 13 | 13 | 100.0000 | |
| gduggal-bwavard | SNP | ti | HG002compoundhet | homalt | 90.8566 | 83.4190 | 99.7503 | 32.3766 | 6168 | 1226 | 5194 | 13 | 12 | 92.3077 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1836 | 98.6234 | 99.7502 | 77.6187 | 6018 | 84 | 5989 | 15 | 7 | 46.6667 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.2432 | 98.7413 | 99.7502 | 68.4984 | 30751 | 392 | 30752 | 77 | 8 | 10.3896 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.2432 | 98.7413 | 99.7502 | 68.4984 | 30751 | 392 | 30752 | 77 | 8 | 10.3896 | |
| astatham-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.0231 | 98.3067 | 99.7501 | 65.5325 | 3193 | 55 | 3193 | 8 | 6 | 75.0000 | |
| asubramanian-gatk | SNP | ti | HG002compoundhet | het | 98.1344 | 96.5702 | 99.7500 | 39.9164 | 9179 | 326 | 9177 | 23 | 14 | 60.8696 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.9622 | 96.2373 | 99.7500 | 82.0192 | 3990 | 156 | 3990 | 10 | 3 | 30.0000 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | homalt | 99.5838 | 99.4183 | 99.7499 | 65.0891 | 5982 | 35 | 5982 | 15 | 13 | 86.6667 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0352 | 98.3306 | 99.7499 | 54.7881 | 17553 | 298 | 17552 | 44 | 4 | 9.0909 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | * | 97.6140 | 95.5678 | 99.7497 | 64.5964 | 3989 | 185 | 3986 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | * | 97.6589 | 95.6541 | 99.7497 | 82.8747 | 4380 | 199 | 4383 | 11 | 6 | 54.5455 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | * | 99.2012 | 98.6588 | 99.7496 | 73.5088 | 19125 | 260 | 19125 | 48 | 23 | 47.9167 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9878 | 96.2873 | 99.7494 | 25.8824 | 2386 | 92 | 2388 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0574 | 87.2068 | 99.7494 | 78.9889 | 409 | 60 | 398 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | het | 99.0834 | 98.4264 | 99.7493 | 64.4229 | 46160 | 738 | 46162 | 116 | 41 | 35.3448 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | * | 73.2800 | 57.9125 | 99.7492 | 70.8000 | 26250 | 19077 | 26252 | 66 | 16 | 24.2424 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.0619 | 94.5157 | 99.7491 | 65.9214 | 20698 | 1201 | 20677 | 52 | 34 | 65.3846 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2372 | 98.7305 | 99.7490 | 37.0877 | 7155 | 92 | 7154 | 18 | 18 | 100.0000 | |
| jli-custom | SNP | tv | func_cds | * | 99.8629 | 99.9771 | 99.7489 | 28.1332 | 4370 | 1 | 4370 | 11 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.3125 | 98.8799 | 99.7489 | 85.0633 | 1589 | 18 | 1589 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | het | 96.5578 | 93.5647 | 99.7488 | 79.9395 | 2777 | 191 | 2780 | 7 | 2 | 28.5714 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6236 | 99.4987 | 99.7487 | 64.4007 | 397 | 2 | 397 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6236 | 99.4987 | 99.7487 | 63.6197 | 397 | 2 | 397 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | * | 99.0356 | 98.3329 | 99.7484 | 73.8523 | 31321 | 531 | 31321 | 79 | 40 | 50.6329 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | * | 39.2587 | 24.4386 | 99.7483 | 94.9137 | 2775 | 8580 | 2774 | 7 | 1 | 14.2857 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | het | 99.5676 | 99.3876 | 99.7482 | 58.0104 | 45929 | 283 | 45560 | 115 | 73 | 63.4783 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | * | 99.0401 | 98.3421 | 99.7481 | 73.9108 | 31676 | 534 | 31676 | 80 | 40 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | homalt | 80.0809 | 66.8919 | 99.7481 | 73.7260 | 396 | 196 | 396 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | homalt | 62.2886 | 45.2830 | 99.7481 | 85.1339 | 792 | 957 | 792 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_siren | homalt | 99.3361 | 98.9274 | 99.7481 | 76.2512 | 1199 | 13 | 1188 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.6787 | 97.6320 | 99.7480 | 46.7338 | 4659 | 113 | 4750 | 12 | 12 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3852 | 99.0251 | 99.7479 | 54.5094 | 14626 | 144 | 14641 | 37 | 15 | 40.5405 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 77.3563 | 63.1748 | 99.7477 | 25.6850 | 5114 | 2981 | 5140 | 13 | 13 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2719 | 98.8007 | 99.7476 | 56.4979 | 16971 | 206 | 16992 | 43 | 6 | 13.9535 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3711 | 98.9975 | 99.7475 | 60.5184 | 395 | 4 | 395 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8736 | 100.0000 | 99.7475 | 55.0256 | 1580 | 0 | 1580 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | * | hetalt | 96.2521 | 92.9933 | 99.7475 | 58.1926 | 1951 | 147 | 1975 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | SNP | * | segdup | * | 99.7488 | 99.7506 | 99.7470 | 89.9398 | 27997 | 70 | 27991 | 71 | 31 | 43.6620 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | het | 98.4494 | 97.1855 | 99.7466 | 54.4068 | 9841 | 285 | 9840 | 25 | 2 | 8.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | het | 98.0696 | 96.4480 | 99.7466 | 60.6896 | 7087 | 261 | 7085 | 18 | 1 | 5.5556 | |
| astatham-gatk | INDEL | I16_PLUS | * | hetalt | 96.0726 | 92.6597 | 99.7466 | 58.1637 | 1944 | 154 | 1968 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | * | map_l125_m0_e0 | * | 70.7547 | 54.8207 | 99.7466 | 75.5092 | 10627 | 8758 | 10627 | 27 | 5 | 18.5185 | |
| ckim-isaac | SNP | ti | map_l150_m1_e0 | * | 71.6515 | 55.9050 | 99.7466 | 75.8793 | 11020 | 8692 | 11020 | 28 | 5 | 17.8571 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | hetalt | 96.0725 | 92.6597 | 99.7463 | 58.0281 | 1944 | 154 | 1966 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e1 | het | 50.1525 | 33.4976 | 99.7460 | 93.1412 | 3535 | 7018 | 3534 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5243 | 99.3038 | 99.7457 | 47.7582 | 1569 | 11 | 1569 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8184 | 99.8912 | 99.7456 | 35.4899 | 2755 | 3 | 2745 | 7 | 1 | 14.2857 | |