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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 342 343 344 345 346 347 348 349 350 ... 1720 1721 » 17251-17300 / 86044 show all
ndellapenna-hhga	SNP	*	map_l100_m0_e0	*	99.0308	98.3192	99.7529	65.5554	32289	552	32290	80	41	51.2500
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7447	99.7365	99.7529	55.2418	6056	16	6056	15	15	100.0000
mlin-fermikit	INDEL	D6_15	HG002compoundhet	hetalt	78.2401	64.3602	99.7528	23.4532	5246	2905	5245	13	13	100.0000
ltrigg-rtg1	SNP	tv	map_l100_m1_e0	*	99.2885	98.8286	99.7528	57.2287	24214	287	24208	60	9	15.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.9599	98.1796	99.7528	64.8872	809	15	807	2	1	50.0000
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0687	94.5254	99.7527	45.0883	2400	139	2420	6	5	83.3333
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7116	99.6705	99.7527	66.7352	4840	16	4840	12	10	83.3333
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7116	99.6705	99.7527	66.8941	4840	16	4840	12	9	75.0000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.0203	98.2985	99.7527	60.4577	10919	189	10893	27	9	33.3333
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8352	99.9180	99.7526	51.8658	2437	2	2419	6	1	16.6667
jli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6909	99.6293	99.7526	66.4708	4838	18	4838	12	8	66.6667
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6909	99.6293	99.7526	66.9619	4838	18	4838	12	9	75.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6806	99.6087	99.7525	66.7490	4837	19	4837	12	10	83.3333
ndellapenna-hhga	SNP	tv	map_l100_m2_e1	*	99.2907	98.8332	99.7525	64.4232	24988	295	24988	62	24	38.7097
raldana-dualsentieon	INDEL	I1_5	map_siren	homalt	99.6286	99.5050	99.7525	77.1148	1206	6	1209	3	2	66.6667
gduggal-bwafb	SNP	tv	segdup	homalt	99.6445	99.5368	99.7524	90.8111	3223	15	3223	8	8	100.0000
ckim-dragen	SNP	tv	map_l125_m2_e1	homalt	99.5877	99.4238	99.7522	65.1046	6039	35	6039	15	13	86.6667
ckim-isaac	SNP	ti	map_l250_m2_e1	homalt	62.4273	45.4289	99.7522	85.0970	805	967	805	2	2	100.0000
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	97.6712	95.6754	99.7520	53.7159	1615	73	1609	4	3	75.0000
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	het	98.8804	98.0239	99.7520	70.6633	18503	373	18503	46	20	43.4783
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	92.9480	87.0130	99.7519	36.5354	402	60	402	1	1	100.0000
asubramanian-gatk	SNP	ti	HG002compoundhet	*	98.1691	96.6358	99.7519	35.8566	16890	588	16888	42	17	40.4762
asubramanian-gatk	SNP	*	map_l100_m0_e0	het	48.7115	32.2235	99.7518	92.2778	6833	14372	6833	17	6	35.2941
ckim-isaac	SNP	*	map_l125_m2_e0	*	73.7324	58.4787	99.7518	72.8403	27323	19400	27325	68	16	23.5294
hfeng-pmm2	SNP	*	map_l150_m1_e0	homalt	99.7650	99.7782	99.7517	71.3283	11248	25	11248	28	11	39.2857
ltrigg-rtg1	SNP	*	map_l125_m0_e0	*	98.5751	97.4258	99.7517	64.2305	18886	499	18884	47	16	34.0426
ltrigg-rtg1	SNP	ti	HG002compoundhet	het	98.5032	97.2856	99.7516	37.6347	9247	258	9237	23	5	21.7391
jmaeng-gatk	SNP	tv	segdup	homalt	99.4735	99.1970	99.7516	89.7966	3212	26	3212	8	8	100.0000
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	91.8804	85.1605	99.7515	76.4930	14456	2519	14453	36	32	88.8889
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	91.8804	85.1605	99.7515	76.4930	14456	2519	14453	36	32	88.8889
rpoplin-dv42	SNP	*	segdup	het	99.7082	99.6651	99.7514	90.3344	17259	58	17253	43	3	6.9767
hfeng-pmm3	SNP	tv	map_siren	het	99.6834	99.6155	99.7514	57.1444	28499	110	28494	71	7	9.8592
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2444	98.7425	99.7514	50.7816	3612	46	3612	9	3	33.3333
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	96.3741	93.2180	99.7514	32.0838	1993	145	2006	5	0	0.0000
astatham-gatk	SNP	*	map_l125_m1_e0	*	91.2465	84.0779	99.7513	74.8310	38110	7217	38104	95	43	45.2632
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.1659	98.5874	99.7512	54.8686	6002	86	6015	15	3	20.0000
astatham-gatk	SNP	*	map_l150_m0_e0	homalt	98.8775	98.0191	99.7511	73.7506	4008	81	4008	10	9	90.0000
gduggal-snapvard	SNP	ti	func_cds	*	99.4321	99.1151	99.7511	27.3375	13665	122	13628	34	14	41.1765
ltrigg-rtg1	SNP	ti	map_l250_m2_e0	*	97.8118	95.9465	99.7510	83.9867	4805	203	4808	12	7	58.3333
ckim-isaac	SNP	*	map_l125_m2_e1	*	73.7959	58.5590	99.7510	72.8548	27641	19561	27643	69	17	24.6377
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.7125	97.6953	99.7510	72.1894	15218	359	15225	38	29	76.3158
ndellapenna-hhga	SNP	*	map_l100_m2_e0	het	99.0800	98.4181	99.7510	64.4052	45665	734	45667	114	41	35.9649
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.1373	96.5750	99.7509	81.8576	4004	142	4004	10	3	30.0000
ltrigg-rtg2	SNP	tv	map_l100_m0_e0	*	98.6223	97.5189	99.7508	54.0500	10809	275	10808	27	2	7.4074
gduggal-bwafb	SNP	ti	*	*	99.8083	99.8659	99.7507	20.3177	2082722	2796	2082858	5206	495	9.5083
jli-custom	INDEL	I1_5	map_l100_m2_e1	het	99.1307	98.5185	99.7506	83.4469	798	12	800	2	0	0.0000
ckim-isaac	SNP	ti	map_l150_m2_e0	*	72.1859	56.5571	99.7506	77.5984	11601	8911	11601	29	5	17.2414
ltrigg-rtg1	SNP	ti	map_l250_m1_e0	homalt	99.6262	99.5022	99.7505	86.3540	1599	8	1599	4	4	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2583	98.7709	99.7505	77.4015	6027	75	5998	15	5	33.3333
hfeng-pmm3	INDEL	*	*	het	99.4705	99.1923	99.7504	58.0356	192565	1568	192191	481	313	65.0728

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