PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17101-17150 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7100 | 99.6561 | 99.7639 | 53.8981 | 10143 | 35 | 10141 | 24 | 24 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4703 | 99.1784 | 99.7639 | 83.7209 | 845 | 7 | 845 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002complexvar | homalt | 99.7026 | 99.6414 | 99.7639 | 58.4249 | 10560 | 38 | 10565 | 25 | 23 | 92.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4703 | 99.1784 | 99.7639 | 84.6391 | 845 | 7 | 845 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | homalt | 88.1167 | 78.9048 | 99.7638 | 88.2047 | 1268 | 339 | 1267 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | map_l100_m1_e0 | * | 99.6742 | 99.5848 | 99.7638 | 62.8483 | 47732 | 199 | 47725 | 113 | 21 | 18.5841 | |
| qzeng-custom | INDEL | I1_5 | * | hetalt | 84.6275 | 73.4792 | 99.7637 | 61.8865 | 8226 | 2969 | 3378 | 8 | 6 | 75.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 51.8223 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 54.0717 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | het | 98.4983 | 97.2647 | 99.7636 | 66.7853 | 12659 | 356 | 12661 | 30 | 5 | 16.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 53.9967 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | homalt | 99.5372 | 99.3119 | 99.7635 | 66.3061 | 10969 | 76 | 10969 | 26 | 25 | 96.1538 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | homalt | 99.5496 | 99.3367 | 99.7633 | 68.9111 | 11382 | 76 | 11382 | 27 | 26 | 96.2963 | |
| hfeng-pmm2 | SNP | * | map_l150_m2_e1 | homalt | 99.7760 | 99.7886 | 99.7633 | 73.5353 | 11802 | 25 | 11802 | 28 | 11 | 39.2857 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | het | 99.0732 | 98.3928 | 99.7631 | 62.7556 | 44630 | 729 | 44632 | 106 | 41 | 38.6792 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | * | 99.3012 | 98.8437 | 99.7631 | 74.2719 | 11369 | 133 | 11369 | 27 | 12 | 44.4444 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | homalt | 99.6477 | 99.5327 | 99.7630 | 89.0347 | 852 | 4 | 842 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | segdup | het | 98.8338 | 97.9219 | 99.7628 | 90.8470 | 11780 | 250 | 11778 | 28 | 2 | 7.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5852 | 99.4085 | 99.7626 | 54.0647 | 25209 | 150 | 25209 | 60 | 50 | 83.3333 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1951 | 98.6340 | 99.7626 | 72.6726 | 32782 | 454 | 32775 | 78 | 58 | 74.3590 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | homalt | 99.8440 | 99.9256 | 99.7625 | 52.9997 | 13438 | 10 | 13443 | 32 | 31 | 96.8750 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.2314 | 98.7059 | 99.7625 | 51.4137 | 839 | 11 | 840 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3362 | 98.9137 | 99.7624 | 51.3621 | 11746 | 129 | 11756 | 28 | 14 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.9685 | 94.3268 | 99.7624 | 46.4589 | 2494 | 150 | 2519 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7077 | 99.6531 | 99.7624 | 58.0995 | 16372 | 57 | 16373 | 39 | 28 | 71.7949 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | * | 37.4814 | 23.0755 | 99.7622 | 94.8394 | 2518 | 8394 | 2517 | 6 | 1 | 16.6667 | |
| ckim-dragen | SNP | * | map_l150_m2_e1 | homalt | 99.4914 | 99.2221 | 99.7621 | 68.4589 | 11735 | 92 | 11740 | 28 | 25 | 89.2857 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | het | 98.0426 | 96.3815 | 99.7620 | 61.0832 | 7964 | 299 | 7964 | 19 | 3 | 15.7895 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | * | 97.3892 | 95.1266 | 99.7620 | 81.0778 | 2518 | 129 | 2515 | 6 | 3 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e0 | homalt | 97.7959 | 95.9060 | 99.7619 | 75.2353 | 10893 | 465 | 10894 | 26 | 14 | 53.8462 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | homalt | 97.8972 | 96.1009 | 99.7619 | 89.4393 | 419 | 17 | 419 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6531 | 93.7323 | 99.7618 | 50.5158 | 3305 | 221 | 3350 | 8 | 7 | 87.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6531 | 93.7323 | 99.7618 | 50.5158 | 3305 | 221 | 3350 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4235 | 99.0875 | 99.7618 | 50.0170 | 2932 | 27 | 2932 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8194 | 97.8947 | 99.7616 | 48.6536 | 837 | 18 | 837 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3346 | 95.0228 | 99.7616 | 43.5987 | 2081 | 109 | 2092 | 5 | 4 | 80.0000 | |
| astatham-gatk | SNP | * | map_l125_m2_e1 | * | 91.3125 | 84.1829 | 99.7615 | 76.3148 | 39736 | 7466 | 39730 | 95 | 43 | 45.2632 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | het | 63.7840 | 46.8782 | 99.7614 | 87.0574 | 21751 | 24648 | 21745 | 52 | 14 | 26.9231 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | * | 98.8943 | 98.0421 | 99.7614 | 58.2016 | 32198 | 643 | 32201 | 77 | 23 | 29.8701 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | hetalt | 97.6611 | 95.6475 | 99.7614 | 69.0744 | 3538 | 161 | 3763 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | homalt | 99.5456 | 99.3309 | 99.7613 | 68.8663 | 11282 | 76 | 11282 | 27 | 26 | 96.2963 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | * | 98.9128 | 98.0786 | 99.7613 | 68.2500 | 11281 | 221 | 11283 | 27 | 6 | 22.2222 | |
| astatham-gatk | INDEL | * | HG002compoundhet | hetalt | 96.8345 | 94.0747 | 99.7612 | 51.5025 | 23688 | 1492 | 23812 | 57 | 56 | 98.2456 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | het | 97.9852 | 96.2712 | 99.7612 | 57.9109 | 6687 | 259 | 6685 | 16 | 1 | 6.2500 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7782 | 99.7952 | 99.7612 | 67.4839 | 5848 | 12 | 5848 | 14 | 5 | 35.7143 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | * | 99.5714 | 99.3825 | 99.7611 | 58.5986 | 32513 | 202 | 32567 | 78 | 66 | 84.6154 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1484 | 94.6692 | 99.7610 | 81.1745 | 2504 | 141 | 2504 | 6 | 4 | 66.6667 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |