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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
17051-17100 / 86044 show all
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.5441
97.3505
99.7673
61.8300
128635128632
66.6667
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.3908
99.0173
99.7672
36.4175
171317171444
100.0000
egarrison-hhgaSNPtimap_l125_m2_e1het
99.2602
98.7583
99.7671
71.8965
18850237188504416
36.3636
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.7555
99.7439
99.7671
54.1386
4284114284102
20.0000
rpoplin-dv42SNPtisegduphet
99.7339
99.7007
99.7671
89.8249
119943611992283
10.7143
rpoplin-dv42SNPtimap_l100_m0_e0homalt
99.4451
99.1253
99.7670
62.0330
77066877061817
94.4444
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.3616
98.9595
99.7670
33.2686
171218171343
75.0000
bgallagher-sentieonINDELI1_5HG002complexvarhetalt
97.6373
95.5968
99.7669
69.6337
165076171244
100.0000
hfeng-pmm3INDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.4663
97.1991
99.7669
60.2778
128437128431
33.3333
eyeh-varpipeSNPtimap_l250_m0_e0homalt
99.8833
100.0000
99.7669
92.9359
436042811
100.0000
gduggal-bwafbSNPtimap_l250_m0_e0homalt
98.9595
98.1651
99.7669
92.8560
428842811
100.0000
gduggal-bwavardSNP*map_l125_m0_e0homalt
98.3897
97.0501
99.7668
70.8893
651419864171511
73.3333
jli-customINDELD1_5HG002complexvar*
99.5191
99.2725
99.7668
57.5505
32477238325187659
77.6316
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3074
94.9664
99.7667
39.5535
2547135256666
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.4435
99.1224
99.7666
66.9356
28012248282076617
25.7576
ltrigg-rtg1SNP*map_l100_m2_e1*
99.3071
98.8520
99.7664
59.3097
738798587387617338
21.9653
ckim-dragenSNP*map_l100_m0_e0homalt
99.4909
99.2169
99.7664
57.4442
1152991115322724
88.8889
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
92.6089
86.4097
99.7664
61.6487
4266742711
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.2092
94.7800
99.7663
39.0116
2542140256166
100.0000
ckim-isaacSNPtvmap_l125_m0_e0*
67.9069
51.4704
99.7662
76.9939
34133218341381
12.5000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.1896
94.7427
99.7662
39.0209
2541141256066
100.0000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8363
99.9065
99.7662
76.2965
21362213451
20.0000
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5914
99.4172
99.7661
48.7717
853585321
50.0000
jlack-gatkSNPtimap_l250_m2_e0homalt
98.6412
97.5415
99.7661
86.8218
170643170643
75.0000
ltrigg-rtg1SNPtvmap_l125_m1_e0*
99.1139
98.4703
99.7659
61.6627
1577124515771379
24.3243
dgrover-gatkINDEL*HG002compoundhethetalt
96.9439
94.2772
99.7659
51.7927
237391441238635655
98.2143
ndellapenna-hhgaSNPtimap_l125_m1_e0het
98.8592
97.9689
99.7658
69.2090
17895371178954220
47.6190
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_diTR_11to50het
98.1238
96.5350
99.7657
66.1570
2981107298174
57.1429
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
98.9430
98.1340
99.7654
46.0565
373471382899
100.0000
jmaeng-gatkSNPtvmap_l250_m2_e1homalt
61.9534
44.9260
99.7653
93.4872
42552142511
100.0000
ltrigg-rtg1SNPtimap_l100_m0_e0het
98.4715
97.2109
99.7652
55.6290
1359339013597324
12.5000
asubramanian-gatkSNP*map_l100_m2_e1het
64.0057
47.1171
99.7652
87.0062
2209724801220915214
26.9231
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
96.9531
94.2953
99.7651
38.9579
2529153254866
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1922
94.7487
99.7651
35.9534
167893169944
100.0000
hfeng-pmm3SNPtimap_l100_m2_e1*
99.6774
99.5898
99.7651
64.5884
492822034927511621
18.1034
hfeng-pmm1INDELI1_5*homalt
99.7725
99.7799
99.7651
52.5960
6029513360299142137
96.4789
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7839
99.8029
99.7650
51.9403
6076125943147
50.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.9665
96.2317
99.7649
58.1536
551621655171311
84.6154
ckim-isaacSNPtvmap_l100_m1_e0*
75.3790
60.5730
99.7648
65.1235
148419660148443512
34.2857
egarrison-hhgaSNPtvmap_l250_m1_e0homalt
99.4138
99.0654
99.7647
86.4065
848884822
100.0000
hfeng-pmm3SNPtimap_l100_m2_e0*
99.6760
99.5874
99.7647
64.5930
487592024875211521
18.2609
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4480
99.1333
99.7647
74.0763
297426296873
42.8571
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7647
99.7647
99.7647
48.5783
848284822
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5342
97.3339
99.7644
69.1366
19057522190574514
31.1111
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5342
97.3339
99.7644
69.1366
19057522190574514
31.1111
egarrison-hhgaSNPtvmap_l100_m1_e0het
99.3126
98.8649
99.7644
63.7472
15242175152423613
36.1111
ndellapenna-hhgaSNPtvmap_l250_m1_e0homalt
99.2958
98.8318
99.7642
85.6708
8461084622
100.0000
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5294
99.2958
99.7642
84.2672
846684622
100.0000
gduggal-snapfbSNPtimap_l125_m2_e1homalt
97.8156
95.9417
99.7641
75.2443
10993465109942614
53.8462
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.4116
99.0616
99.7639
37.2813
4645444649115
45.4545