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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 337 338 339 340 341 342 343 344 345 ... 1720 1721 » 17001-17050 / 86044 show all
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3872	99.0063	99.7710	48.5556	11757	118	11762	27	17	62.9630
ltrigg-rtg1	SNP	tv	*	*	99.8285	99.8863	99.7709	19.9654	968593	1103	968859	2225	103	4.6292
ltrigg-rtg1	SNP	ti	map_l125_m1_e0	het	98.7165	97.6842	99.7708	60.2794	17843	423	17844	41	7	17.0732
gduggal-snapvard	SNP	ti	map_l100_m2_e0	homalt	97.9436	96.1822	99.7707	62.4459	17610	699	17408	40	33	82.5000
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6427	99.5150	99.7707	54.4892	25236	123	25236	58	45	77.5862
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7709	99.7712	99.7706	38.2436	1308	3	1305	3	2	66.6667
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.8636	97.9730	99.7706	84.0117	435	9	435	1	1	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6991	97.6504	99.7706	72.0664	15211	366	15219	35	25	71.4286
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.3003	96.8730	99.7704	41.9223	6072	196	6083	14	11	78.5714
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8161	99.8620	99.7702	64.9597	2171	3	2171	5	0	0.0000
astatham-gatk	SNP	*	segdup	het	98.7752	97.7998	99.7702	91.3893	16936	381	16930	39	2	5.1282
gduggal-snapvard	SNP	tv	map_l150_m2_e0	homalt	97.7892	95.8854	99.7701	73.2819	3915	168	3906	9	7	77.7778
eyeh-varpipe	SNP	ti	HG002complexvar	hetalt	99.6433	99.5169	99.7701	22.0458	206	1	6075	14	13	92.8571
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8465	99.9232	99.7699	29.4425	3903	3	3902	9	1	11.1111
egarrison-hhga	SNP	ti	map_l125_m2_e0	het	99.2599	98.7550	99.7699	71.8619	18641	235	18641	43	16	37.2093
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.0087	96.3087	99.7699	41.5864	2583	99	2601	6	6	100.0000
ckim-dragen	INDEL	*	HG002compoundhet	hetalt	96.0007	92.5060	99.7699	50.0702	23293	1887	23417	54	54	100.0000
hfeng-pmm2	SNP	tv	map_l125_m2_e1	homalt	99.7860	99.8024	99.7696	69.9104	6062	12	6062	14	5	35.7143
rpoplin-dv42	SNP	tv	map_l150_m1_e0	homalt	99.2485	98.7329	99.7695	71.6659	3896	50	3896	9	9	100.0000
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	homalt	99.3685	98.9708	99.7695	86.1400	1731	18	1731	4	3	75.0000
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7439	99.7184	99.7695	31.0247	3895	11	3895	9	3	33.3333
ndellapenna-hhga	SNP	tv	map_l100_m1_e0	*	99.2885	98.8123	99.7692	62.3765	24210	291	24210	56	24	42.8571
hfeng-pmm1	SNP	*	map_l150_m2_e0	homalt	99.7606	99.7521	99.7692	73.4870	11670	29	11670	27	10	37.0370
hfeng-pmm3	SNP	*	map_l150_m2_e0	homalt	99.7521	99.7350	99.7691	73.4090	11668	31	11668	27	10	37.0370
dgrover-gatk	INDEL	I1_5	HG002complexvar	hetalt	98.0896	96.4658	99.7691	70.7729	1665	61	1728	4	4	100.0000
ltrigg-rtg1	SNP	ti	map_l150_m2_e0	het	98.4904	97.2440	99.7691	66.6179	12526	355	12529	29	5	17.2414
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9182	98.0817	99.7690	70.7759	63195	1236	63064	146	87	59.5890
jlack-gatk	SNP	ti	map_l250_m2_e1	homalt	98.6012	97.4605	99.7689	86.8645	1727	45	1727	4	3	75.0000
jlack-gatk	SNP	tv	map_l150_m1_e0	homalt	99.0943	98.4288	99.7688	70.0054	3884	62	3884	9	6	66.6667
astatham-gatk	INDEL	I1_5	HG002complexvar	hetalt	98.0296	96.3499	99.7688	70.6232	1663	63	1726	4	4	100.0000
asubramanian-gatk	SNP	*	map_l125_m2_e0	*	47.7392	31.3764	99.7686	91.5938	14660	32063	14657	34	8	23.5294
jmaeng-gatk	SNP	*	*	*	99.6144	99.4608	99.7686	23.7289	3038147	16472	3038001	7046	253	3.5907
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.9344	96.1664	99.7686	57.4637	12041	480	12074	28	18	64.2857
ndellapenna-hhga	SNP	ti	map_l125_m0_e0	*	98.8454	97.9392	99.7685	71.9216	12499	263	12499	29	16	55.1724
ltrigg-rtg2	SNP	*	map_l125_m2_e1	het	98.5451	97.3516	99.7684	58.0187	28855	785	28856	67	6	8.9552
ckim-isaac	INDEL	D1_5	*	homalt	97.8426	95.9899	99.7683	50.1114	46964	1962	46933	109	36	33.0275
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	92.5642	86.3306	99.7681	43.5629	3442	545	3442	8	8	100.0000
ltrigg-rtg2	SNP	*	map_siren	*	99.4570	99.1479	99.7681	47.8411	144981	1246	144975	337	38	11.2760
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7825	99.7971	99.7680	39.6992	3443	7	3440	8	2	25.0000
ckim-dragen	SNP	*	HG002compoundhet	het	99.7322	99.6967	99.7677	46.4046	14135	43	14173	33	8	24.2424
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	het	98.9081	98.0635	99.7675	53.0390	30029	593	30032	70	6	8.5714
dgrover-gatk	INDEL	D1_5	HG002complexvar	*	99.6498	99.5323	99.7675	58.6672	32562	153	32617	76	66	86.8421
hfeng-pmm2	SNP	*	func_cds	het	99.8702	99.9731	99.7675	25.5047	11158	3	11155	26	0	0.0000
hfeng-pmm3	SNP	*	map_l100_m0_e0	homalt	99.7288	99.6902	99.7675	63.7304	11584	36	11584	27	10	37.0370
hfeng-pmm1	SNP	*	map_l100_m0_e0	homalt	99.7374	99.7074	99.7675	63.8562	11586	34	11586	27	10	37.0370
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5356	99.3048	99.7674	61.5385	857	6	858	2	1	50.0000
hfeng-pmm2	SNP	tv	map_l125_m2_e0	homalt	99.7840	99.8006	99.7674	69.8673	6005	12	6005	14	5	35.7143
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.4013	97.0721	99.7674	68.6817	431	13	429	1	0	0.0000
jli-custom	INDEL	*	HG002complexvar	homalt	99.8318	99.8964	99.7673	56.4104	26999	28	27007	63	57	90.4762
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.5441	97.3505	99.7673	60.9276	1286	35	1286	3	1	33.3333

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