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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 335 336 337 338 339 340 341 342 343 ... 1720 1721 » 16901-16950 / 86044 show all
ltrigg-rtg1	INDEL	I1_5	*	hetalt	96.8345	94.0598	99.7778	71.7595	10530	665	10776	24	24	100.0000
gduggal-snapvard	SNP	ti	map_l100_m1_e0	homalt	97.9288	96.1470	99.7778	60.0714	17268	692	17067	38	31	81.5789
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1386	98.5075	99.7778	71.4829	462	7	449	1	1	100.0000
gduggal-snapvard	SNP	ti	map_l125_m2_e0	homalt	97.8264	95.9500	99.7776	68.4862	10898	460	10766	24	19	79.1667
ckim-isaac	SNP	tv	map_siren	het	84.7375	73.6377	99.7775	56.9492	21067	7542	21072	47	12	25.5319
jli-custom	SNP	*	map_l250_m2_e1	homalt	99.3906	99.0066	99.7775	85.5799	2691	27	2691	6	6	100.0000
ltrigg-rtg2	SNP	tv	map_l250_m2_e1	het	95.4049	91.3995	99.7774	74.6007	1796	169	1793	4	0	0.0000
rpoplin-dv42	SNP	tv	map_l150_m2_e0	homalt	99.2738	98.7754	99.7773	74.0315	4033	50	4033	9	9	100.0000
raldana-dualsentieon	INDEL	D1_5	*	het	99.5220	99.2680	99.7773	56.3227	86933	641	86937	194	136	70.1031
rpoplin-dv42	INDEL	*	HG002complexvar	homalt	99.6016	99.4265	99.7773	55.5190	26872	155	26879	60	53	88.3333
jmaeng-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8366	99.8959	99.7773	52.9712	13434	14	13440	30	28	93.3333
astatham-gatk	SNP	tv	map_l100_m2_e1	*	91.8357	85.0651	99.7773	71.9862	21507	3776	21503	48	16	33.3333
jmaeng-gatk	SNP	ti	HG002compoundhet	het	99.3342	98.8953	99.7771	40.7782	9400	105	9400	21	17	80.9524
raldana-dualsentieon	INDEL	I6_15	HG002complexvar	het	98.1424	96.5605	99.7771	58.4090	2274	81	2238	5	4	80.0000
bgallagher-sentieon	SNP	ti	func_cds	het	99.8707	99.9647	99.7769	24.1158	8501	3	8499	19	0	0.0000
hfeng-pmm2	SNP	ti	func_cds	het	99.8707	99.9647	99.7769	23.7626	8501	3	8499	19	0	0.0000
hfeng-pmm1	SNP	*	map_l100_m1_e0	*	99.5814	99.3868	99.7767	62.8958	71959	444	71948	161	49	30.4348
jlack-gatk	SNP	tv	map_l150_m2_e0	homalt	99.1124	98.4570	99.7766	72.3207	4020	63	4020	9	6	66.6667
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7468	99.7171	99.7766	54.5091	6697	19	6699	15	8	53.3333
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.3692	98.9653	99.7765	72.8230	1339	14	1339	3	1	33.3333
rpoplin-dv42	SNP	*	map_l125_m2_e1	homalt	99.5110	99.2471	99.7764	69.2363	17400	132	17400	39	38	97.4359
ghariani-varprowl	SNP	ti	map_l150_m0_e0	homalt	98.3468	96.9576	99.7764	75.9674	2677	84	2677	6	4	66.6667
gduggal-snapplat	SNP	*	HG002complexvar	homalt	98.9173	98.0729	99.7763	21.2516	283014	5561	282787	634	338	53.3123
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.1734	98.5778	99.7763	50.5713	1317	19	1338	3	1	33.3333
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4403	99.1066	99.7762	43.0060	6656	60	8025	18	13	72.2222
ltrigg-rtg2	SNP	*	map_l125_m2_e0	het	98.5358	97.3259	99.7762	57.8912	28534	784	28535	64	6	9.3750
ltrigg-rtg1	SNP	*	map_l250_m2_e0	homalt	99.6459	99.5160	99.7760	87.2925	2673	13	2673	6	6	100.0000
gduggal-bwaplat	INDEL	I1_5	*	homalt	95.8146	92.1560	99.7758	57.5165	55688	4740	55641	125	99	79.2000
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1373	96.5517	99.7758	69.8852	448	16	445	1	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8006	99.8255	99.7757	49.8187	4004	7	4004	9	1	11.1111
ltrigg-rtg1	SNP	ti	map_l125_m0_e0	*	98.6208	97.4926	99.7755	64.1831	12442	320	12442	28	12	42.8571
raldana-dualsentieon	SNP	*	map_l250_m2_e0	homalt	99.4772	99.1809	99.7753	85.3224	2664	22	2664	6	3	50.0000
raldana-dualsentieon	INDEL	*	HG002complexvar	het	98.7829	97.8101	99.7752	56.2974	45200	1012	44831	101	72	71.2871
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7112	99.6472	99.7752	70.6918	6214	22	6214	14	12	85.7143
jli-custom	SNP	*	map_l250_m2_e0	homalt	99.3833	98.9948	99.7749	85.5202	2659	27	2659	6	6	100.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e0	*	99.3059	98.8413	99.7748	59.2762	73107	857	73104	165	38	23.0303
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8873	100.0000	99.7748	33.9286	443	0	443	1	1	100.0000
rpoplin-dv42	SNP	ti	segdup	*	99.7773	99.7799	99.7748	89.3733	19494	43	19492	44	19	43.1818
gduggal-bwaplat	INDEL	*	segdup	homalt	95.8873	92.2917	99.7745	93.8089	886	74	885	2	2	100.0000
astatham-gatk	SNP	tv	map_l100_m1_e0	*	91.7374	84.8986	99.7745	70.4613	20801	3700	20797	47	16	34.0426
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5499	99.3263	99.7744	49.3526	1327	9	1327	3	0	0.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5122	99.2515	99.7743	48.6278	1326	10	1326	3	0	0.0000
rpoplin-dv42	SNP	*	map_l125_m2_e0	homalt	99.5066	99.2403	99.7743	69.1861	17243	132	17243	39	38	97.4359
ltrigg-rtg2	SNP	tv	map_l250_m2_e0	het	95.3430	91.2887	99.7743	74.4189	1771	169	1768	4	0	0.0000
gduggal-bwaplat	INDEL	I1_5	segdup	homalt	96.5066	93.4461	99.7743	93.3702	442	31	442	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7743	99.7743	99.7743	34.9486	442	1	442	1	1	100.0000
ltrigg-rtg2	SNP	tv	*	*	99.8284	99.8825	99.7743	19.4672	968557	1139	968810	2192	110	5.0183
ltrigg-rtg2	SNP	*	*	het	99.8157	99.8572	99.7742	16.9842	1870922	2676	1871158	4235	135	3.1877
ltrigg-rtg1	INDEL	D1_5	*	*	99.2818	98.7945	99.7740	55.6693	144976	1769	144802	328	127	38.7195
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	homalt	99.8445	99.9151	99.7740	60.1815	10589	9	10594	24	22	91.6667

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