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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 332 333 334 335 336 337 338 339 340 ... 1720 1721 » 16751-16800 / 86044 show all
ckim-vqsr	INDEL	*	HG002complexvar	het	99.5556	99.3270	99.7852	57.9433	45901	311	45518	98	61	62.2449
hfeng-pmm1	INDEL	*	HG002complexvar	*	99.1357	98.4949	99.7850	57.1428	75780	1158	75642	163	121	74.2331
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3495	98.9177	99.7849	42.8747	457	5	464	1	1	100.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8341	99.8836	99.7848	57.0872	17157	20	17153	37	8	21.6216
asubramanian-gatk	SNP	tv	map_l125_m1_e0	het	48.5238	32.0561	99.7847	92.9805	3246	6880	3245	7	1	14.2857
ndellapenna-hhga	SNP	tv	map_l250_m2_e0	homalt	99.3569	98.9328	99.7847	86.9321	927	10	927	2	2	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e0	*	99.3568	98.9326	99.7847	74.8691	31512	340	31512	68	32	47.0588
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5211	99.2589	99.7847	51.9691	6027	45	6024	13	8	61.5385
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.0356	98.2979	99.7845	67.5978	462	8	463	1	1	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	92.1781	85.6492	99.7845	35.1049	376	63	463	1	1	100.0000
jli-custom	INDEL	I1_5	*	*	99.4941	99.2055	99.7844	57.0293	149467	1197	149502	323	257	79.5666
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	98.7188	97.6759	99.7842	42.6822	4539	108	4623	10	10	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4954	99.2083	99.7842	37.6168	7393	59	7397	16	10	62.5000
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.9782	94.3258	99.7842	76.6072	1413	85	1387	3	2	66.6667
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	92.7883	86.7091	99.7841	61.8573	24504	3756	24493	53	43	81.1321
rpoplin-dv42	SNP	tv	map_l100_m2_e1	homalt	99.5691	99.3550	99.7841	64.9074	9242	60	9242	20	18	90.0000
ltrigg-rtg1	SNP	ti	map_l150_m1_e0	het	98.4476	97.1463	99.7841	64.1912	12017	353	12019	26	5	19.2308
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.1302	98.4848	99.7840	42.2693	455	7	462	1	1	100.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e0	homalt	99.6784	99.5731	99.7840	89.6709	933	4	924	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	98.9273	98.0851	99.7840	68.0469	461	9	462	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0389	98.3049	99.7840	74.1160	14324	247	14324	31	7	22.5806
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0389	98.3049	99.7840	74.1160	14324	247	14324	31	7	22.5806
hfeng-pmm1	SNP	tv	map_l125_m2_e0	homalt	99.7923	99.8006	99.7840	69.7785	6005	12	6005	13	5	38.4615
asubramanian-gatk	SNP	ti	map_l100_m0_e0	het	49.6427	33.0401	99.7840	91.6649	4620	9363	4620	10	5	50.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.0354	98.2979	99.7840	66.4006	462	8	462	1	1	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	*	99.3609	98.9413	99.7840	74.9205	31869	341	31869	69	32	46.3768
hfeng-pmm3	SNP	tv	map_l125_m2_e0	homalt	99.7590	99.7341	99.7838	69.7058	6001	16	6001	13	5	38.4615
asubramanian-gatk	SNP	ti	map_l100_m2_e0	het	65.0317	48.2333	99.7838	86.0511	14770	15852	14766	32	12	37.5000
gduggal-snapvard	SNP	tv	map_l100_m0_e0	homalt	97.9071	96.0998	99.7837	64.7675	3696	150	3690	8	5	62.5000
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1552	98.5347	99.7836	72.0617	32749	487	32742	71	45	63.3803
hfeng-pmm3	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2415	98.7053	99.7836	77.2969	6023	79	5994	13	3	23.0769
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	59.1512	461	1	461	1	1	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	58.0762	461	1	461	1	1	100.0000
ckim-isaac	SNP	ti	map_l100_m1_e0	het	82.8228	70.7902	99.7835	65.4154	21196	8746	21200	46	4	8.6957
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	62.5000	461	1	461	1	1	100.0000
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	homalt	99.8492	99.9151	99.7834	59.8813	10589	9	10594	23	21	91.3043
gduggal-snapvard	SNP	*	map_l125_m2_e1	homalt	97.9034	96.0929	99.7834	68.5949	16847	685	16588	36	28	77.7778
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1803	98.5845	99.7833	71.8915	63519	912	63530	138	117	84.7826
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	30.2572	460	2	460	1	1	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	92.1775	85.6492	99.7831	34.9788	376	63	460	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	28.3048	460	2	460	1	1	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	29.4028	460	2	460	1	1	100.0000
ltrigg-rtg1	SNP	*	map_l125_m2_e0	*	99.1232	98.4718	99.7831	64.7024	46009	714	46011	100	28	28.0000
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	93.0896	87.2376	99.7831	59.6058	12885	1885	12884	28	19	67.8571
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5664	99.3506	99.7831	28.4161	459	3	460	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	29.8326	460	2	460	1	1	100.0000
jpowers-varprowl	SNP	ti	map_siren	homalt	99.6196	99.4567	99.7830	54.0684	37710	206	37711	82	57	69.5122
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.4570	99.1333	99.7828	28.5493	915	8	919	2	2	100.0000
ckim-dragen	SNP	ti	HG002compoundhet	*	99.7941	99.8055	99.7828	35.8899	17444	34	17457	38	18	47.3684
dgrover-gatk	INDEL	I6_15	HG002complexvar	het	99.4230	99.0658	99.7827	59.6952	2333	22	2296	5	4	80.0000

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