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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
16601-16650 / 86044 show all
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
79.5102
66.0798
99.7928
43.7451
1276655144532
66.6667
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
79.5102
66.0798
99.7928
43.7451
1276655144532
66.6667
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8269
99.8611
99.7927
69.0150
14382144432
66.6667
gduggal-snapvardSNPtvmap_l125_m2_e0homalt
98.0723
96.4102
99.7927
68.8173
58012165778129
75.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7805
99.7685
99.7926
58.3234
38789385087
87.5000
jlack-gatkINDELD1_5HG002complexvarhomalt
99.8161
99.8396
99.7926
59.1577
1058117105882221
95.4545
gduggal-bwavardSNPtvmap_l150_m1_e0homalt
98.7838
97.7952
99.7926
71.2507
385987384986
75.0000
ckim-isaacSNPtimap_l125_m2_e0*
75.2532
60.4006
99.7925
72.3144
182761198218276387
18.4211
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
86.5391
76.3934
99.7924
26.7984
35501097144233
100.0000
gduggal-snapfbSNPtimap_l100_m2_e0homalt
98.4558
97.1544
99.7924
69.0150
17788521177893721
56.7568
ltrigg-rtg2SNPtimap_siren*
99.4787
99.1669
99.7924
46.9044
995188369951320730
14.4928
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4211
99.0527
99.7923
61.9326
4810464804102
20.0000
ndellapenna-hhgaSNPtimap_l150_m2_e0*
99.0695
98.3571
99.7923
74.0705
20175337201754223
54.7619
ndellapenna-hhgaSNP*map_l125_m1_e0*
99.1686
98.5527
99.7922
67.5463
44671656446719349
52.6882
gduggal-bwavardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
85.7527
75.1764
99.7922
61.3457
231257636230464838
79.1667
bgallagher-sentieonINDEL*HG002complexvarhet
99.6698
99.5477
99.7922
57.6447
46003209456339561
64.2105
hfeng-pmm2SNPtimap_l150_m2_e1homalt
99.8050
99.8180
99.7921
73.2339
7679147679167
43.7500
astatham-gatkSNPtimap_l125_m2_e0*
91.2512
84.0571
99.7920
76.0047
254344824254305329
54.7170
ckim-isaacSNPtimap_l100_m2_e1het
83.1462
71.2597
99.7920
67.1300
22062889822066464
8.6957
jpowers-varprowlSNPtvHG002complexvarhet
99.3313
98.8748
99.7919
23.6187
149035169614915531160
19.2926
rpoplin-dv42SNP*map_l100_m1_e0homalt
99.6291
99.4667
99.7919
61.1512
26859144268605652
92.8571
rpoplin-dv42SNPtimap_l100_m2_e0homalt
99.6664
99.5412
99.7919
62.9736
1822584182263836
94.7368
ndellapenna-hhgaSNPtvmap_sirenhet
99.3169
98.8465
99.7918
55.1017
28279330282795919
32.2034
ltrigg-rtg2SNPtiHG002compoundhet*
99.3879
98.9873
99.7918
33.3089
17301177172553613
36.1111
jmaeng-gatkSNPtvHG002compoundhethomalt
99.4223
99.0555
99.7918
42.9493
335632335576
85.7143
ltrigg-rtg2SNP*map_l100_m2_e1*
99.2263
98.6673
99.7916
56.2116
737419967373815424
15.5844
gduggal-bwavardSNPtimap_l125_m0_e0homalt
98.3384
96.9272
99.7913
70.3716
4353138430497
77.7778
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5833
99.3763
99.7912
54.8113
478347810
0.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8955
100.0000
99.7912
75.1685
478047811
100.0000
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8955
100.0000
99.7912
74.9083
478047811
100.0000
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8955
100.0000
99.7912
74.6829
478047811
100.0000
astatham-gatkSNPtimap_l100_m2_e1het
87.0268
77.1576
99.7911
74.6941
238887072238815023
46.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5459
99.3019
99.7911
49.8616
6686476688149
64.2857
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.0970
98.4127
99.7908
31.1983
192231190843
75.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5825
99.3750
99.7908
68.8193
14319143130
0.0000
rpoplin-dv42SNP*map_l100_m2_e1homalt
99.6343
99.4783
99.7907
63.6404
27651145276525854
93.1034
ckim-dragenSNPtimap_l150_m2_e1homalt
99.4457
99.1031
99.7907
67.9320
76246976291615
93.7500
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.4703
953295321
50.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.5736
953295321
50.0000
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.3781
953295321
50.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.2523
953295321
50.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3756
97.0003
99.7905
79.9603
1047732410478224
18.1818
ltrigg-rtg1SNP*map_l150_m1_e0*
98.9007
98.0267
99.7905
66.4727
30005604300076322
34.9206
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5382
99.2871
99.7905
44.9407
6685486668144
28.5714
bgallagher-sentieonINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.6223
86.4151
99.7904
48.0392
4587247611
100.0000
bgallagher-sentieonSNP*map_l125_m0_e0homalt
99.5370
99.2849
99.7904
67.2503
66644866641410
71.4286
gduggal-snapplatSNPtimap_l125_m0_e0homalt
91.7078
84.8363
99.7904
71.0087
3810681380988
100.0000
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
94.5039
89.7494
99.7904
31.1688
3944547611
100.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.6872
99.5842
99.7904
53.5992
479247611
100.0000
rpoplin-dv42SNPtimap_siren*
99.6562
99.5227
99.7902
53.3616
9987647999868210138
65.7143