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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
16451-16500 / 86044 show all
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.8320
92.1659
99.8018
61.7166
10647905105772111
52.3810
ltrigg-rtg1SNPtimap_l150_m2_e0*
98.9478
98.1084
99.8017
69.1640
20124388201284016
40.0000
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.9411
98.0952
99.8016
65.5738
5151050310
0.0000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7238
99.6461
99.8015
61.5050
28160100281625644
78.5714
asubramanian-gatkSNP*map_sirenhet
78.4554
64.6317
99.8014
73.5808
58809321825880011733
28.2051
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.2201
98.6457
99.8013
56.9126
19593269195863921
53.8462
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0067
98.2249
99.8012
86.1050
498950211
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2868
502550211
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4311
502550210
0.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4347
502550211
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
gduggal-bwafbSNP*HG002complexvarhet
99.7664
99.7319
99.8010
20.1804
4642521248464384926324
34.9892
rpoplin-dv42SNPtvmap_l125_m2_e1homalt
99.4382
99.0780
99.8010
69.8334
60185660181212
100.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3062
98.8166
99.8008
85.8631
501650111
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.4758
99.1531
99.8007
37.5709
1802915418026362
5.5556
hfeng-pmm3SNPtimap_sirenhet
99.6838
99.5672
99.8007
53.2950
621122706210312411
8.8710
ckim-dragenINDELI1_5HG002complexvarhet
99.6858
99.5712
99.8007
57.6433
1811178180303622
61.1111
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.6190
99.4381
99.8005
49.8273
1468783155113120
64.5161
ltrigg-rtg2SNP*map_l100_m2_e0*
99.2235
98.6534
99.8003
56.1674
729689967296514624
16.4384
ndellapenna-hhgaSNPtimap_l100_m1_e0het
99.0953
98.4002
99.8002
62.6312
29463479294655924
40.6780
egarrison-hhgaSNP*map_l100_m1_e0het
99.3656
98.9352
99.7999
63.8790
44876483448779031
34.4444
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6003
99.4016
99.7997
45.8452
398724398780
0.0000
asubramanian-gatkSNPtvmap_l125_m2_e0*
46.3923
30.2201
99.7997
92.3039
4983115064982102
20.0000
gduggal-bwavardSNPtvmap_l150_m2_e0homalt
98.7875
97.7957
99.7996
73.3173
399390398486
75.0000
raldana-dualsentieonINDELI1_5HG002complexvarhomalt
99.8477
99.8959
99.7995
52.5914
1343414134382727
100.0000
ltrigg-rtg2SNP*map_l150_m0_e0het
96.8156
94.0050
99.7994
59.7632
74644767461150
0.0000
ltrigg-rtg1SNPtimap_l125_m0_e0homalt
99.6656
99.5324
99.7991
68.6301
447021447099
100.0000
rpoplin-dv42SNPtvmap_l125_m2_e0homalt
99.4329
99.0693
99.7991
69.7738
59615659611212
100.0000
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8037
99.8082
99.7991
72.6490
2185742218574444
100.0000
rpoplin-dv42SNPtimap_l100_m1_e0homalt
99.6655
99.5323
99.7990
60.4404
1787684178773634
94.4444
ltrigg-rtg1SNPtimap_l150_m2_e1*
98.9537
98.1229
99.7988
69.2768
20334389203384116
39.0244
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3035
98.8131
99.7988
59.4317
1623419516370333
9.0909
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8231
99.8474
99.7988
56.7435
39256396982
25.0000
ltrigg-rtg1SNP*map_l125_m1_e0*
99.1092
98.4292
99.7987
62.1857
44615712446169028
31.1111
asubramanian-gatkINDELI1_5HG002complexvarhomalt
99.6538
99.5092
99.7987
52.7938
1338266133892726
96.2963
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.6106
99.4231
99.7987
35.5602
396423396686
75.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.3823
95.0803
99.7986
57.9620
54502825451119
81.8182
egarrison-hhgaSNPtimap_l150_m2_e0*
99.3881
98.9811
99.7985
75.2011
20303209203034120
48.7805
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_diTR_11to50het
97.9888
96.2435
99.7985
65.0879
2972116297265
83.3333
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
89.2731
80.7561
99.7985
45.8371
5447129854471111
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8184
99.8386
99.7982
36.6402
24744247351
20.0000
hfeng-pmm3INDEL*HG002complexvar*
99.1462
98.5027
99.7982
57.0316
75786115275648153115
75.1634
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.0477
98.3085
99.7982
63.4722
9881798921
50.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6028
97.4359
99.7980
86.4421
4941349411
100.0000
astatham-gatkSNPtvsegdup*
99.1149
98.4412
99.7979
91.5044
83991338395176
35.2941
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.1986
94.7313
99.7979
56.1836
54303025431119
81.8182
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_diTR_11to50het
97.8035
95.8873
99.7978
64.0929
2961127296164
66.6667
ltrigg-rtg1SNPtimap_l125_m2_e1*
99.1256
98.4625
99.7978
64.9540
30099470301026119
31.1475
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
96.7615
93.9048
99.7976
61.1635
4933249310
0.0000