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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
16401-16450 / 86044 show all
ckim-isaacSNP*map_l250_m1_e0homalt
58.8606
41.7377
99.8058
83.7974
10281435102822
100.0000
asubramanian-gatkSNPtv*het
98.8211
97.8557
99.8057
26.7081
57900812688578944112742
3.7267
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.1845
98.5711
99.8055
37.0083
462267461990
0.0000
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
87.4518
77.8195
99.8053
29.5610
1035295102522
100.0000
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5867
99.3693
99.8051
53.1359
6145396145120
0.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8239
99.8428
99.8051
49.9512
25404256050
0.0000
hfeng-pmm3SNPtimap_l150_m2_e1homalt
99.7920
99.7790
99.8050
73.1684
7676177676156
40.0000
gduggal-snapvardSNPtvmap_l125_m1_e0homalt
98.0991
96.4505
99.8050
66.5043
56522085629118
72.7273
hfeng-pmm1SNPtimap_l150_m2_e1homalt
99.7855
99.7660
99.8049
73.2531
7675187675156
40.0000
jmaeng-gatkSNPti**
99.6502
99.4959
99.8049
21.8521
20749981051320749394056178
4.3886
ltrigg-rtg2SNP*map_l125_m1_e0het
98.5086
97.2457
99.8048
55.1586
2761078227610546
11.1111
hfeng-pmm2SNP*map_l125_m1_e0homalt
99.8078
99.8107
99.8048
66.6048
1687332168733314
42.4242
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6632
99.5223
99.8044
57.7539
28125135285785639
69.6429
ckim-isaacSNPtvmap_l100_m0_e0*
71.0742
55.1877
99.8043
69.9269
611749676119123
25.0000
ndellapenna-hhgaSNPtimap_l100_m0_e0*
99.0443
98.2959
99.8041
65.3402
21400371214014225
59.5238
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4468
99.0921
99.8040
75.9768
152814152831
33.3333
ckim-vqsrSNPtifunc_cds*
99.7642
99.7244
99.8040
29.1716
137493813747270
0.0000
jpowers-varprowlSNPtimap_l100_m2_e1homalt
99.4410
99.0808
99.8039
64.9625
18324170183243628
77.7778
hfeng-pmm1INDELD6_15HG002complexvarhetalt
97.6862
95.6565
99.8039
48.4848
96944101821
50.0000
ghariani-varprowlSNPtimap_l100_m0_e0homalt
98.9754
98.1605
99.8038
62.7769
763114376311510
66.6667
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7729
99.7421
99.8038
67.8356
96672596671915
78.9474
jli-customSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7367
99.6698
99.8037
67.8161
96603296601912
63.1579
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8197
99.8356
99.8037
72.1124
2186336218634342
97.6744
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.2273
94.7806
99.8035
33.5162
2506138254055
100.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.7177
99.6321
99.8035
42.5670
406215406485
62.5000
raldana-dualsentieonSNP*map_l150_m0_e0homalt
99.5464
99.2908
99.8033
71.7833
406029406085
62.5000
cchapple-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4541
99.1074
99.8032
43.2339
11769106116642318
78.2609
asubramanian-gatkSNP*map_l125_m1_e0*
46.3852
30.2138
99.8032
91.3119
136953163213692276
22.2222
asubramanian-gatkSNPtvmap_l125_m2_e1*
46.6345
30.4256
99.8030
92.2720
5068115895067102
20.0000
hfeng-pmm1SNPtimap_l150_m2_e0homalt
99.7833
99.7637
99.8030
73.2106
7598187598156
40.0000
hfeng-pmm3INDELD6_15HG002complexvarhetalt
97.4277
95.1629
99.8030
47.8149
96449101321
50.0000
hfeng-pmm3SNPtimap_l150_m2_e0homalt
99.7899
99.7768
99.8030
73.1277
7599177599156
40.0000
asubramanian-gatkSNPtimap_l125_m0_e0het
39.3510
24.5068
99.8029
95.3774
20256238202544
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1238
98.4538
99.8029
79.4946
10634167106342112
57.1429
ckim-dragenSNP*HG002compoundhet*
99.7929
99.7831
99.8027
41.5217
2576656258045126
50.9804
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.3161
87.6212
99.8027
73.3610
101221430101182017
85.0000
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.3161
87.6212
99.8027
73.3610
101221430101182017
85.0000
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
93.4170
87.7992
99.8027
58.9642
222653094222614435
79.5455
dgrover-gatkSNP*HG002compoundhet*
99.8063
99.8102
99.8025
41.2435
2577349257665136
70.5882
dgrover-gatkSNP*map_l150_m0_e0homalt
99.3242
98.8506
99.8025
74.1808
404247404286
75.0000
hfeng-pmm2INDELD6_15HG002complexvarhetalt
97.4274
95.1629
99.8024
48.6555
96449101021
50.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
98.3090
96.8597
99.8023
58.5209
55521805553119
81.8182
asubramanian-gatkSNPtvmap_sirenhet
74.9187
59.9671
99.8022
78.0195
1715611453171533410
29.4118
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
98.2369
96.7202
99.8020
58.3539
55441885545119
81.8182
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.6047
99.4083
99.8020
85.1950
504350410
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9429
98.0986
99.8019
70.2570
44833869448338930
33.7079
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9429
98.0986
99.8019
70.2570
44833869448338930
33.7079
gduggal-bwavardSNPtvmap_l150_m2_e1homalt
98.7655
97.7504
99.8019
73.3170
404193403186
75.0000
jpowers-varprowlSNPtimap_l100_m2_e0homalt
99.4381
99.0770
99.8019
64.9829
18140169181403628
77.7778
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.8320
92.1659
99.8018
61.7166
10647905105772111
52.3810