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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
16351-16400 / 86044 show all
ckim-dragenSNP*map_l125_m1_e0homalt
99.5672
99.3256
99.8098
61.0436
16791114167963229
90.6250
asubramanian-gatkSNP*map_l125_m0_e0*
35.5829
21.6508
99.8098
95.1193
419715188419785
62.5000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8910
99.9727
99.8094
51.1312
36651366577
100.0000
ghariani-varprowlSNPtimap_l100_m1_e0homalt
99.4271
99.0479
99.8092
60.5686
17789171177893426
76.4706
jli-customSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7298
99.6506
99.8091
71.0989
313711313764
66.6667
egarrison-hhgaSNPtvmap_l100_m2_e1*
99.4981
99.1892
99.8090
65.1604
25078205250784819
39.5833
gduggal-snapvardSNPtvmap_l100_m2_e0homalt
98.2526
96.7441
99.8089
63.7260
891430088811711
64.7059
ltrigg-rtg1SNPtimap_l150_m1_e0*
98.9175
98.0418
99.8089
66.8010
19326386193293716
43.2432
astatham-gatkSNPtimap_l250_m1_e0homalt
98.6465
97.5109
99.8089
85.2776
156740156733
100.0000
hfeng-pmm3SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7135
99.6183
99.8088
66.4313
522252211
100.0000
jmaeng-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7135
99.6183
99.8088
64.2271
522252211
100.0000
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6888
99.5692
99.8086
46.3323
6241276258122
16.6667
asubramanian-gatkSNPtvsegduphomalt
98.1636
96.5720
99.8085
89.8001
3127111312766
100.0000
hfeng-pmm1SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6176
99.4275
99.8084
67.3342
521352111
100.0000
hfeng-pmm2SNPtvHG002compoundhethet
94.2146
89.2146
99.8084
51.8565
4169504416782
25.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.7401
99.6720
99.8083
54.5545
364612364572
28.5714
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7497
97.7134
99.8083
64.4325
367586364474
57.1429
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7497
97.7134
99.8083
64.4325
367586364474
57.1429
ltrigg-rtg1SNPtimap_l100_m1_e0*
99.3155
98.8275
99.8083
56.5736
47369562473719127
29.6703
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1963
98.5919
99.8081
71.9245
32768468327626344
69.8413
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
99.3302
98.8571
99.8079
61.2435
103812103922
100.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6165
99.4259
99.8079
54.6157
363721363672
28.5714
rpoplin-dv42INDELD6_15*homalt
99.1567
98.5141
99.8078
51.4461
6232946233127
58.3333
gduggal-bwavardSNPtvmap_l125_m1_e0homalt
98.7755
97.7645
99.8076
66.5926
57291315706119
81.8182
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8741
99.9407
99.8075
37.7626
674146741135
38.4615
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.7454
95.7670
99.8073
46.5308
4570202466199
100.0000
jpowers-varprowlSNPtimap_l250_m1_e0homalt
98.1979
96.6397
99.8072
88.8547
155354155333
100.0000
qzeng-customSNP*HG002complexvar*
99.1204
98.4430
99.8072
19.9398
742639117467238431398631
45.1359
ghariani-varprowlSNPtimap_l250_m1_e0homalt
98.1979
96.6397
99.8072
87.4354
155354155333
100.0000
egarrison-hhgaSNPtvmap_l100_m2_e0*
99.4951
99.1851
99.8071
65.1309
24829204248294819
39.5833
dgrover-gatkINDELI1_5HG002complexvarhomalt
99.8663
99.9256
99.8070
53.0009
1343810134432625
96.1538
ltrigg-rtg1INDELD6_15*homalt
99.3481
98.8935
99.8070
44.0385
6256706207129
75.0000
astatham-gatkINDEL*HG002complexvarhet
99.5588
99.3119
99.8070
57.7885
45894318455168855
62.5000
astatham-gatkINDELI1_5HG002complexvarhomalt
99.8625
99.9182
99.8069
52.9404
1343711134422626
100.0000
astatham-gatkSNPtvHG002compoundhet*
99.1767
98.5543
99.8069
49.0836
879412987891716
94.1176
ckim-vqsrSNP*func_cds*
99.7574
99.7080
99.8069
31.6969
180975318094350
0.0000
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.9744
98.1557
99.8069
48.5309
361968361974
57.1429
hfeng-pmm1SNPtimap_l100_m0_e0homalt
99.7619
99.7170
99.8069
63.0178
7752227752156
40.0000
hfeng-pmm3SNPtimap_l100_m0_e0homalt
99.7684
99.7299
99.8069
62.9000
7753217753156
40.0000
hfeng-pmm2INDELI1_5HG002complexvarhomalt
99.8477
99.8885
99.8069
52.0702
1343315134372625
96.1538
cchapple-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7125
99.6183
99.8069
55.4600
522251711
100.0000
jmaeng-gatkINDELI1_5HG002complexvar*
99.3649
98.9270
99.8067
56.9963
33005358330516446
71.8750
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
98.9788
98.1646
99.8066
46.6460
155129154831
33.3333
jli-customINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
99.0403
98.2857
99.8066
60.5344
103218103222
100.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6822
99.5584
99.8063
74.0988
360716360773
42.8571
cchapple-customSNP***
99.8448
99.8832
99.8063
20.8246
3051052356730495575917726
12.2697
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6683
99.5308
99.8063
75.9886
360617360675
71.4286
ckim-isaacSNPtvmap_l150_m0_e0*
66.0468
49.3531
99.8062
82.1762
20602114206041
25.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8004
99.7947
99.8062
63.2740
486151511
100.0000
ckim-dragenSNPtimap_l100_m0_e0homalt
99.4968
99.1896
99.8059
56.2121
77116377141514
93.3333