PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16301-16350 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | * | map_l125_m2_e0 | * | 99.4490 | 99.0882 | 99.8124 | 70.5171 | 46297 | 426 | 46297 | 87 | 41 | 47.1264 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8358 | 99.8591 | 99.8124 | 64.8592 | 27639 | 39 | 27673 | 52 | 16 | 30.7692 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | het | 99.3933 | 98.9779 | 99.8123 | 65.4669 | 30309 | 313 | 30310 | 57 | 18 | 31.5789 | |
| egarrison-hhga | SNP | * | map_l125_m2_e1 | * | 99.4493 | 99.0890 | 99.8122 | 70.5609 | 46772 | 430 | 46772 | 88 | 41 | 46.5909 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1605 | 98.5173 | 99.8122 | 66.6528 | 4784 | 72 | 4784 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | SNP | tv | func_cds | het | 99.8872 | 99.9624 | 99.8121 | 28.8312 | 2656 | 1 | 2656 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8457 | 99.8792 | 99.8121 | 39.2368 | 7443 | 9 | 7438 | 14 | 3 | 21.4286 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | homalt | 99.5006 | 99.1910 | 99.8121 | 86.3830 | 1594 | 13 | 1594 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | het | 98.5813 | 97.3804 | 99.8121 | 58.3672 | 18587 | 500 | 18589 | 35 | 4 | 11.4286 | |
| jli-custom | SNP | ti | func_cds | het | 99.8825 | 99.9530 | 99.8121 | 22.8972 | 8500 | 4 | 8500 | 16 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8590 | 99.9059 | 99.8120 | 81.1281 | 1062 | 1 | 1062 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.3266 | 98.8459 | 99.8120 | 86.8985 | 2655 | 31 | 2655 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | homalt | 97.3031 | 94.9173 | 99.8119 | 53.8350 | 1606 | 86 | 1592 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8119 | 99.8119 | 99.8119 | 81.3574 | 1061 | 2 | 1061 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5544 | 99.2984 | 99.8118 | 74.6933 | 2123 | 15 | 2121 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e1 | homalt | 99.8146 | 99.8175 | 99.8118 | 69.0869 | 17500 | 32 | 17500 | 33 | 14 | 42.4242 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.7642 | 95.7991 | 99.8117 | 30.3607 | 2098 | 92 | 2120 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | * | 99.3385 | 98.8697 | 99.8117 | 63.7221 | 73128 | 836 | 73130 | 138 | 63 | 45.6522 | |
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | homalt | 98.4857 | 97.1945 | 99.8116 | 63.6530 | 11294 | 326 | 11127 | 21 | 16 | 76.1905 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7175 | 99.6237 | 99.8115 | 81.3892 | 1059 | 4 | 1059 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | homalt | 99.8439 | 99.8765 | 99.8114 | 90.5570 | 3234 | 4 | 3176 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | * | 99.2192 | 98.6340 | 99.8113 | 53.5259 | 71414 | 989 | 71410 | 135 | 22 | 16.2963 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6231 | 99.4357 | 99.8113 | 69.4243 | 2643 | 15 | 2645 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3658 | 98.9242 | 99.8113 | 35.2869 | 2115 | 23 | 2116 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m1_e0 | homalt | 99.2491 | 98.6932 | 99.8112 | 85.5873 | 1586 | 21 | 1586 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4129 | 99.0178 | 99.8112 | 75.1670 | 2117 | 21 | 2115 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5483 | 97.3169 | 99.8112 | 34.2765 | 2684 | 74 | 2643 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6042 | 99.3980 | 99.8112 | 69.7820 | 2642 | 16 | 2643 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7838 | 99.7565 | 99.8111 | 59.5001 | 16389 | 40 | 16384 | 31 | 5 | 16.1290 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | homalt | 97.4654 | 95.2274 | 99.8111 | 72.0544 | 2115 | 106 | 2114 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | het | 99.3984 | 98.9890 | 99.8111 | 65.4651 | 30647 | 313 | 30648 | 58 | 18 | 31.0345 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 79.6677 | 66.2895 | 99.8110 | 27.4375 | 4804 | 2443 | 4754 | 9 | 9 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | * | 99.3413 | 98.8761 | 99.8109 | 63.7314 | 73897 | 840 | 73899 | 140 | 63 | 45.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | homalt | 99.0054 | 98.2130 | 99.8108 | 88.9664 | 2638 | 48 | 2638 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4810 | 99.1533 | 99.8108 | 81.4724 | 1054 | 9 | 1055 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | * | het | 99.5604 | 99.3114 | 99.8107 | 56.3200 | 86971 | 603 | 86977 | 165 | 71 | 43.0303 | |
| ghariani-varprowl | SNP | ti | func_cds | homalt | 99.8769 | 99.9431 | 99.8107 | 21.2934 | 5272 | 3 | 5272 | 10 | 7 | 70.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4336 | 99.0594 | 99.8106 | 68.9594 | 2633 | 25 | 2635 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.3538 | 98.9011 | 99.8106 | 72.2835 | 540 | 6 | 527 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9052 | 100.0000 | 99.8105 | 51.3073 | 1580 | 0 | 1580 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | homalt | 98.2305 | 96.6996 | 99.8105 | 63.7425 | 8995 | 307 | 8956 | 17 | 11 | 64.7059 | |
| dgrover-gatk | SNP | ti | map_l250_m1_e0 | homalt | 99.0596 | 98.3199 | 99.8105 | 85.5645 | 1580 | 27 | 1580 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | tv | * | het | 99.8830 | 99.9556 | 99.8105 | 23.6829 | 591433 | 263 | 591362 | 1123 | 57 | 5.0757 | |
| hfeng-pmm3 | SNP | tv | map_siren | * | 99.7604 | 99.7104 | 99.8104 | 56.7354 | 45797 | 133 | 45789 | 87 | 15 | 17.2414 | |
| jli-custom | INDEL | D1_5 | * | homalt | 99.8764 | 99.9428 | 99.8102 | 61.2620 | 48898 | 28 | 48904 | 93 | 90 | 96.7742 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | * | 99.8063 | 99.8025 | 99.8102 | 41.0420 | 25771 | 51 | 25764 | 49 | 25 | 51.0204 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8418 | 99.8734 | 99.8102 | 55.3516 | 1578 | 2 | 1578 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e0 | homalt | 99.8130 | 99.8158 | 99.8101 | 69.0538 | 17343 | 32 | 17343 | 33 | 14 | 42.4242 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.1843 | 98.5666 | 99.8099 | 65.3618 | 5776 | 84 | 5776 | 11 | 7 | 63.6364 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e0 | het | 98.5679 | 97.3564 | 99.8099 | 58.2477 | 18377 | 499 | 18379 | 35 | 4 | 11.4286 | |