PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 322 323 324 325 326 327 328 329 330 ... 1720 1721 » 16251-16300 / 86044 show all
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.5241	97.2660	99.8150	78.5959	6475	182	6476	12	1	8.3333
jlack-gatk	SNP	tv	map_l125_m2_e0	homalt	99.1889	98.5707	99.8149	67.8533	5931	86	5931	11	7	63.6364
jlack-gatk	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.7982	3235	3	3235	6	6	100.0000
hfeng-pmm1	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	90.2264	3236	2	3236	6	6	100.0000
jli-custom	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.3818	3235	3	3235	6	6	100.0000
egarrison-hhga	SNP	*	map_l250_m2_e1	homalt	99.5018	99.1906	99.8149	87.6004	2696	22	2696	5	5	100.0000
dgrover-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.5365	3236	2	3236	6	6	100.0000
astatham-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.4470	3236	2	3236	6	6	100.0000
bgallagher-sentieon	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.4615	3235	3	3235	6	6	100.0000
raldana-dualsentieon	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.2756	3236	2	3236	6	6	100.0000
asubramanian-gatk	SNP	ti	map_l150_m0_e0	het	34.9037	21.1497	99.8148	97.0413	1078	4019	1078	2	2	100.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7426	99.6705	99.8147	66.5588	4840	16	4849	9	8	88.8889
ckim-isaac	SNP	*	map_l100_m1_e0	*	78.4897	64.6727	99.8146	63.0504	46825	25578	46832	87	22	25.2874
eyeh-varpipe	SNP	ti	map_l150_m0_e0	homalt	99.8168	99.8189	99.8146	77.6220	2756	5	2692	5	3	60.0000
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	87.8108	78.3843	99.8145	76.5550	1077	297	1076	2	2	100.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9071	100.0000	99.8145	47.6826	2152	0	2152	4	4	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	57.3175	40.2014	99.8145	34.3484	519	772	538	1	1	100.0000
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9071	100.0000	99.8145	47.5553	2152	0	2152	4	4	100.0000
asubramanian-gatk	SNP	ti	map_l125_m2_e0	*	48.4647	32.0015	99.8144	91.1697	9683	20575	9681	18	6	33.3333
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8588	99.9033	99.8143	52.9260	13435	13	13441	25	24	96.0000
ndellapenna-hhga	SNP	*	map_l250_m2_e1	homalt	99.3346	98.8595	99.8143	86.9517	2687	31	2687	5	5	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6415	99.4695	99.8142	51.5034	11812	63	11817	22	15	68.1818
ckim-isaac	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.6487	95.5751	99.8142	40.4145	9655	447	9670	18	11	61.1111
dgrover-gatk	INDEL	*	HG002complexvar	het	99.6862	99.5586	99.8141	57.9282	46008	204	45634	85	51	60.0000
asubramanian-gatk	SNP	tv	map_l100_m2_e0	het	61.3148	44.2480	99.8141	88.7563	6981	8796	6979	13	2	15.3846
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.4360	81.0127	99.8141	38.0184	512	120	537	1	1	100.0000
gduggal-bwavard	SNP	tv	map_l125_m2_e1	homalt	98.7179	97.6457	99.8140	68.9260	5931	143	5903	11	9	81.8182
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1653	98.5252	99.8138	69.6830	45028	674	45028	84	10	11.9048
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1653	98.5252	99.8138	69.6830	45028	674	45028	84	10	11.9048
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.3923	97.0109	99.8136	86.7219	1071	33	1071	2	2	100.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6976	99.5818	99.8136	41.7639	2143	9	2142	4	4	100.0000
jpowers-varprowl	SNP	ti	map_l150_m0_e0	homalt	98.3835	96.9938	99.8136	78.2964	2678	83	2678	5	4	80.0000
cchapple-custom	SNP	*	segdup	homalt	99.8463	99.8790	99.8136	87.7694	10730	13	10710	20	20	100.0000
ckim-gatk	SNP	tv	segdup	homalt	99.5043	99.1970	99.8135	89.9144	3212	26	3212	6	6	100.0000
gduggal-bwavard	SNP	tv	map_l100_m0_e0	homalt	98.6984	97.6079	99.8135	64.7875	3754	92	3747	7	5	71.4286
hfeng-pmm3	INDEL	I1_5	segdup	het	99.5342	99.2565	99.8134	94.7961	534	4	535	1	0	0.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7512	99.6892	99.8133	54.3984	1604	5	1604	3	2	66.6667
gduggal-bwafb	SNP	*	map_l250_m2_e1	homalt	98.9985	98.1972	99.8130	89.0383	2669	49	2669	5	5	100.0000
bgallagher-sentieon	SNP	*	func_cds	*	99.8899	99.9669	99.8129	24.1761	18144	6	18141	34	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.6441	2136	2	2134	4	1	25.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.8740	2136	2	2134	4	1	25.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8362	99.8597	99.8128	76.4258	2135	3	2133	4	1	25.0000
egarrison-hhga	SNP	*	map_l250_m2_e0	homalt	99.4958	99.1809	99.8127	87.5461	2664	22	2664	5	5	100.0000
ckim-isaac	SNP	tv	map_siren	*	81.9877	69.5646	99.8126	55.0084	31951	13979	31956	60	25	41.6667
eyeh-varpipe	SNP	*	HG002complexvar	*	99.8557	99.8989	99.8126	18.3366	753622	763	699806	1314	293	22.2983
gduggal-bwavard	SNP	ti	map_l100_m0_e0	homalt	98.3810	96.9900	99.8126	63.0879	7540	234	7457	14	11	78.5714
ltrigg-rtg2	SNP	ti	map_l250_m1_e0	homalt	99.6259	99.4400	99.8126	84.3683	1598	9	1598	3	3	100.0000
gduggal-bwavard	SNP	tv	map_l125_m2_e0	homalt	98.7568	97.7231	99.8125	68.8568	5880	137	5857	11	9	81.8182

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge