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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 316 317 318 319 320 321 322 323 324 ... 1720 1721 » 15951-16000 / 86044 show all
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
astatham-gatk	SNP	*	HG002compoundhet	het	98.6981	97.5878	99.8340	46.2177	13836	342	13834	23	22	95.6522
asubramanian-gatk	SNP	ti	map_l150_m1_e0	*	39.2304	24.4115	99.8340	94.1489	4812	14900	4810	8	4	50.0000
asubramanian-gatk	SNP	*	map_l100_m2_e0	*	60.9821	43.8984	99.8339	85.3165	32469	41495	32463	54	14	25.9259
cchapple-custom	SNP	*	map_l250_m0_e0	homalt	97.6442	95.5485	99.8339	90.2320	601	28	601	1	1	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3956	93.1863	99.8338	31.7550	2366	173	2403	4	4	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3956	93.1863	99.8338	31.7550	2366	173	2403	4	4	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7694	99.7050	99.8338	75.7174	5407	16	5407	9	2	22.2222
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7694	99.7050	99.8338	75.7174	5407	16	5407	9	2	22.2222
ltrigg-rtg2	SNP	*	map_l150_m1_e0	het	98.0986	96.4227	99.8338	58.7339	18625	691	18625	31	2	6.4516
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4045	98.9789	99.8338	50.4652	6010	62	6006	10	5	50.0000
hfeng-pmm2	SNP	tv	HG002compoundhet	*	96.9561	94.2396	99.8337	46.6519	8409	514	8407	14	7	50.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2515	98.6760	99.8336	71.5436	2385	32	2400	4	4	100.0000
ckim-dragen	SNP	tv	map_l100_m1_e0	homalt	99.6733	99.5134	99.8336	57.5832	8999	44	8999	15	13	86.6667
ltrigg-rtg2	INDEL	D1_5	map_l100_m2_e0	homalt	98.8432	97.8723	99.8336	76.9113	598	13	600	1	1	100.0000
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5711	99.3100	99.8335	74.5893	3598	25	3598	6	2	33.3333
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2568	98.6869	99.8334	39.3004	10221	136	10186	17	16	94.1176
eyeh-varpipe	SNP	*	map_l250_m1_e0	homalt	99.7542	99.6752	99.8333	88.3918	2455	8	2396	4	4	100.0000
hfeng-pmm3	INDEL	I1_5	*	*	99.5494	99.2672	99.8332	56.8186	149560	1104	149606	250	187	74.8000
ckim-dragen	SNP	*	HG002compoundhet	homalt	99.8656	99.8980	99.8332	35.0217	10771	11	10771	18	18	100.0000
egarrison-hhga	SNP	ti	map_l100_m0_e0	*	99.3678	98.9068	99.8331	66.9886	21533	238	21534	36	20	55.5556
ltrigg-rtg2	SNP	*	map_l250_m2_e0	het	95.8350	92.1448	99.8331	76.0408	4786	408	4786	8	1	12.5000
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1559	98.4882	99.8328	57.1769	3583	55	3583	6	4	66.6667
hfeng-pmm3	SNP	*	HG002compoundhet	het	96.0659	92.5730	99.8327	43.9121	13125	1053	13125	22	5	22.7273
hfeng-pmm2	SNP	ti	map_l125_m2_e0	homalt	99.8283	99.8239	99.8327	68.6045	11338	20	11338	19	9	47.3684
hfeng-pmm2	INDEL	D1_5	*	*	99.4930	99.1557	99.8326	57.8117	145506	1239	145558	244	146	59.8361
ltrigg-rtg1	SNP	ti	map_l100_m0_e0	homalt	99.7102	99.5884	99.8324	61.6545	7742	32	7742	13	13	100.0000
jpowers-varprowl	SNP	ti	map_l125_m2_e1	homalt	99.2450	98.6647	99.8322	70.9730	11305	153	11305	19	15	78.9474
gduggal-bwafb	SNP	*	segdup	homalt	99.7625	99.6928	99.8322	89.4414	10710	33	10710	18	18	100.0000
ltrigg-rtg2	INDEL	I1_5	map_siren	homalt	99.5854	99.3399	99.8321	73.3974	1204	8	1189	2	1	50.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0127	98.2067	99.8321	79.0112	4162	76	4162	7	4	57.1429
bgallagher-sentieon	INDEL	I1_5	HG002complexvar	*	99.6940	99.5564	99.8319	56.9171	33215	148	33263	56	45	80.3571
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1846	98.5457	99.8318	70.9620	63494	937	63506	107	86	80.3738
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	98.6772	97.5494	99.8314	64.0612	4737	119	4737	8	5	62.5000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3938	98.9601	99.8314	43.2370	8279	87	8291	14	13	92.8571
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8050	99.7787	99.8314	54.7146	11271	25	11248	19	17	89.4737
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1609	98.4997	99.8312	49.4969	5843	89	5913	10	6	60.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2623	98.7000	99.8311	74.5091	2961	39	2955	5	1	20.0000
eyeh-varpipe	SNP	ti	HG002complexvar	het	99.8630	99.8948	99.8311	17.2379	314435	331	297366	503	109	21.6700
egarrison-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6677	99.5048	99.8311	60.3522	10047	50	10048	17	14	82.3529
gduggal-snapplat	SNP	*	segdup	homalt	99.4486	99.0692	99.8310	88.7280	10643	100	10636	18	13	72.2222
ltrigg-rtg2	SNP	tv	map_l150_m1_e0	*	98.6367	97.4707	99.8310	62.1132	10636	276	10635	18	2	11.1111
ckim-isaac	SNP	*	map_siren	het	87.0731	77.2065	99.8309	53.7836	70251	20740	70263	119	18	15.1261
egarrison-hhga	SNP	ti	map_siren	het	99.5580	99.2867	99.8308	53.2460	61937	445	61938	105	38	36.1905
ndellapenna-hhga	SNP	ti	map_l125_m1_e0	*	99.1869	98.5512	99.8308	67.6959	28910	425	28910	49	27	55.1020
eyeh-varpipe	SNP	*	map_l100_m0_e0	homalt	99.8121	99.7935	99.8307	65.9910	11596	24	11205	19	8	42.1053
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.4586	91.4533	99.8307	34.9752	2322	217	2359	4	3	75.0000
jpowers-varprowl	SNP	ti	map_l125_m2_e0	homalt	99.2383	98.6529	99.8307	70.9546	11205	153	11205	19	15	78.9474
ltrigg-rtg1	INDEL	*	*	homalt	99.6060	99.3824	99.8305	54.1259	124398	773	124268	211	185	87.6777
gduggal-bwavard	SNP	ti	map_l150_m1_e0	homalt	98.6247	97.4478	99.8303	71.2444	7140	187	7059	12	9	75.0000

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