PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1551-1600 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.6011 | 71 | 3 | 71 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5413 | 99.0868 | 100.0000 | 78.5149 | 651 | 6 | 651 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.2340 | 36 | 1 | 36 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.9665 | 85.1278 | 100.0000 | 30.7314 | 1099 | 192 | 1127 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3442 | 92.9463 | 100.0000 | 24.7911 | 7524 | 571 | 7560 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1063 | 94.3753 | 100.0000 | 23.8971 | 6443 | 384 | 6452 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3146 | 92.8912 | 100.0000 | 26.9952 | 7592 | 581 | 7629 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5598 | 93.3484 | 100.0000 | 31.4834 | 8673 | 618 | 8716 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1241 | 94.4089 | 100.0000 | 25.3923 | 6501 | 385 | 6514 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 77.8607 | 63.7475 | 100.0000 | 28.1116 | 313 | 178 | 335 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.7685 | 97.5669 | 100.0000 | 70.8696 | 401 | 10 | 402 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9991 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9914 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0534 | 98.1246 | 100.0000 | 31.5937 | 1465 | 28 | 1468 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7987 | 95.6923 | 100.0000 | 22.5767 | 622 | 28 | 631 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8917 | 99.7835 | 100.0000 | 28.5271 | 461 | 1 | 461 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 40.5454 | 1330 | 0 | 1330 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.4783 | 87.7551 | 100.0000 | 25.8621 | 43 | 6 | 43 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 92.2581 | 12 | 2 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 88.8298 | 42 | 5 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 89.0000 | 43 | 5 | 44 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.8454 | 90.1961 | 100.0000 | 88.6473 | 46 | 5 | 47 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 95.0673 | 11 | 2 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 94.7791 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 94.9219 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 97.1429 | 5 | 2 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 97.3958 | 5 | 2 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.9849 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 78.3784 | 8 | 0 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_siren | hetalt | 66.6667 | 50.0000 | 100.0000 | 83.9286 | 8 | 8 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.1039 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.3372 | 19 | 0 | 20 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9024 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8999 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.5283 | 54 | 6 | 54 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 29.5238 | 17.3184 | 100.0000 | 39.4737 | 31 | 148 | 46 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9900 | 1 | 0 | 1 | 0 | 0 | ||