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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 313 314 315 316 317 318 319 320 321 ... 1720 1721 » 15801-15850 / 86044 show all
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	*	99.3542	98.8671	99.8462	61.3943	47388	543	47390	73	38	52.0548
astatham-gatk	SNP	ti	map_l100_m1_e0	*	92.0088	85.3122	99.8461	68.2409	40891	7040	40884	63	36	57.1429
hfeng-pmm1	INDEL	D1_5	*	het	99.5580	99.2715	99.8461	55.4481	86936	638	86940	134	51	38.0597
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7565	99.6672	99.8461	33.6736	3893	13	3892	6	2	33.3333
ltrigg-rtg1	SNP	ti	*	het	99.8539	99.8618	99.8460	16.3632	1280123	1771	1280140	1975	52	2.6329
bgallagher-sentieon	SNP	tv	map_l125_m1_e0	homalt	99.7095	99.5734	99.8460	64.1604	5835	25	5835	9	6	66.6667
hfeng-pmm1	SNP	ti	map_l125_m1_e0	homalt	99.8143	99.7827	99.8460	66.1307	11021	24	11021	17	7	41.1765
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8842	99.9226	99.8459	59.1543	3875	3	3887	6	2	33.3333
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.6923	99.5392	99.8459	28.7987	3888	18	3888	6	1	16.6667
ckim-dragen	SNP	tv	segdup	homalt	99.9074	99.9691	99.8458	89.2553	3237	1	3237	5	5	100.0000
hfeng-pmm3	SNP	tv	segdup	homalt	99.8920	99.9382	99.8457	90.1933	3236	2	3236	5	5	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.4463	97.0858	99.8455	77.6924	6463	194	6463	10	0	0.0000
jlack-gatk	SNP	*	map_l150_m2_e1	homalt	99.0927	98.3512	99.8455	71.6669	11632	195	11632	18	13	72.2222
dgrover-gatk	SNP	ti	HG002compoundhet	*	99.8369	99.8284	99.8455	35.6925	17448	30	17446	27	21	77.7778
gduggal-bwaplat	INDEL	D1_5	segdup	het	96.4899	93.3526	99.8454	96.8946	646	46	646	1	0	0.0000
asubramanian-gatk	SNP	ti	map_l125_m1_e0	*	47.1088	30.8267	99.8454	90.8763	9043	20292	9041	14	5	35.7143
ckim-dragen	INDEL	I16_PLUS	*	hetalt	95.3433	91.2297	99.8454	58.3691	1914	184	1937	3	3	100.0000
ckim-dragen	SNP	ti	map_l125_m1_e0	homalt	99.5597	99.2757	99.8453	60.3228	10965	80	10970	17	16	94.1176
hfeng-pmm2	SNP	tv	map_l100_m1_e0	homalt	99.8507	99.8562	99.8452	62.5538	9030	13	9030	14	5	35.7143
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6908	99.5369	99.8452	60.6918	3869	18	3869	6	6	100.0000
astatham-gatk	SNP	tv	map_l125_m1_e0	homalt	99.4259	99.0102	99.8451	64.3015	5802	58	5802	9	6	66.6667
ckim-dragen	INDEL	D1_5	HG002complexvar	het	99.7370	99.6292	99.8451	55.8027	20688	77	20632	32	11	34.3750
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7314	99.6182	99.8449	68.2587	9655	37	9655	15	13	86.6667
ltrigg-rtg2	SNP	ti	map_l100_m0_e0	het	98.2231	96.6531	99.8449	50.2864	13515	468	13519	21	2	9.5238
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.4343	99.0271	99.8449	39.8008	3868	38	3863	6	3	50.0000
gduggal-bwafb	SNP	*	map_l150_m2_e0	homalt	99.4033	98.9657	99.8448	74.8531	11578	121	11578	18	11	61.1111
ltrigg-rtg1	SNP	*	map_l100_m0_e0	homalt	99.7372	99.6299	99.8447	62.2918	11577	43	11575	18	15	83.3333
hfeng-pmm2	INDEL	D1_5	*	homalt	99.8457	99.8467	99.8447	59.0004	48851	75	48855	76	74	97.3684
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.2920	98.7455	99.8446	31.3666	3857	49	3856	6	1	16.6667
bgallagher-sentieon	INDEL	I16_PLUS	*	hetalt	95.0034	90.6101	99.8444	57.6357	1901	197	1925	3	3	100.0000
ckim-isaac	SNP	ti	map_l100_m2_e1	*	80.3859	67.2749	99.8441	64.2491	33291	16194	33295	52	10	19.2308
gduggal-snapplat	SNP	*	map_l250_m1_e0	homalt	87.5513	77.9537	99.8439	88.7661	1920	543	1919	3	3	100.0000
jlack-gatk	SNP	*	map_l150_m2_e0	homalt	99.0914	98.3503	99.8438	71.6709	11506	193	11506	18	13	72.2222
bgallagher-sentieon	SNP	tv	map_l100_m0_e0	homalt	99.6221	99.4020	99.8433	61.4866	3823	23	3823	6	4	66.6667
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6831	99.5234	99.8433	60.8736	10859	52	10830	17	7	41.1765
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.9634	98.0991	99.8431	67.2451	30551	592	30551	48	17	35.4167
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9634	98.0991	99.8431	67.2451	30551	592	30551	48	17	35.4167
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8821	99.9214	99.8429	48.2941	2542	2	2542	4	0	0.0000
hfeng-pmm3	SNP	ti	map_l125_m2_e1	homalt	99.8210	99.7993	99.8428	68.5547	11435	23	11435	18	8	44.4444
dgrover-gatk	SNP	ti	map_l125_m0_e0	homalt	99.4074	98.9757	99.8428	67.2382	4445	46	4445	7	5	71.4286
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7927	99.7427	99.8427	56.7264	3877	10	3809	6	3	50.0000
gduggal-bwafb	SNP	tv	map_l100_m0_e0	homalt	99.3993	98.9600	99.8426	67.1804	3806	40	3806	6	4	66.6667
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1151	98.3983	99.8425	40.4315	8232	134	8242	13	12	92.3077
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4112	98.9838	99.8424	34.1207	5065	52	5068	8	8	100.0000
ckim-isaac	SNP	ti	map_l100_m2_e0	*	80.3204	67.1841	99.8422	64.2807	32894	16067	32898	52	10	19.2308
ndellapenna-hhga	SNP	tv	map_siren	*	99.4997	99.1596	99.8422	55.1910	45544	386	45544	72	30	41.6667
gduggal-bwaplat	SNP	tv	segdup	homalt	98.7827	97.7455	99.8422	90.3210	3165	73	3164	5	5	100.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1472	92.7162	99.8418	68.4316	611	48	631	1	1	100.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1472	92.7162	99.8418	68.4316	611	48	631	1	1	100.0000
ckim-vqsr	SNP	tv	segdup	homalt	98.5612	97.3132	99.8416	90.0895	3151	87	3151	5	5	100.0000

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