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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15751-15800 / 86044 show all
hfeng-pmm1SNPtvfunc_cdshet
99.8871
99.9247
99.8495
28.9115
26552265440
0.0000
hfeng-pmm2SNPtvmap_l100_m2_e1homalt
99.8549
99.8602
99.8495
64.9261
9289139289145
35.7143
hfeng-pmm1SNPtvmap_siren*
99.7188
99.5885
99.8494
56.2301
45741189457346922
31.8841
ltrigg-rtg1SNPtimap_l150_m1_e0homalt
99.6993
99.5496
99.8494
70.3647
72943372951111
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5118
99.1766
99.8493
51.4275
132511132520
0.0000
astatham-gatkSNPtvmap_l125_m2_e0homalt
99.4410
99.0361
99.8492
66.8223
595958595996
66.6667
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4741
99.1018
99.8492
51.2858
132412132420
0.0000
ckim-gatkINDELD1_5HG002complexvarhomalt
99.8633
99.8773
99.8492
60.1757
1058513105921614
87.5000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6608
99.4733
99.8491
69.3074
264414264642
50.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6608
99.4733
99.8491
69.8452
264414264643
75.0000
ckim-vqsrINDELD1_5HG002complexvarhomalt
99.8538
99.8585
99.8491
60.1802
1058315105901614
87.5000
gduggal-bwavardINDEL**homalt
93.4187
87.7664
99.8491
40.7725
1098591531310921416592
55.7576
astatham-gatkSNPtvfunc_cdshet
99.7173
99.5860
99.8490
31.6916
264611264540
0.0000
astatham-gatkSNPtimap_l100_m2_e1*
92.0971
85.4623
99.8489
69.7778
422917194422846436
56.2500
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3985
98.9521
99.8489
49.8485
132214132220
0.0000
eyeh-varpipeSNP*map_l250_m2_e1homalt
99.7772
99.7057
99.8489
89.2201
27108264344
100.0000
ckim-vqsrINDELI1_5HG002complexvar*
99.3737
98.9030
99.8489
56.8918
32997366330425041
82.0000
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6041
99.3604
99.8489
69.0699
264117264342
50.0000
raldana-dualsentieonINDELI1_5HG002complexvar*
99.3540
98.8640
99.8488
56.1047
32984379330265041
82.0000
egarrison-hhgaSNPtvmap_sirenhet
99.4896
99.1331
99.8486
55.6665
28361248283614315
34.8837
egarrison-hhgaSNP*map_l100_m1_e0*
99.5435
99.2404
99.8485
62.8269
718535507185410949
44.9541
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2470
98.6527
99.8485
51.0567
131818131820
0.0000
ckim-gatkSNPti**
99.6817
99.5154
99.8485
21.6609
20754041010720753453148170
5.4003
gduggal-bwafbSNPtimap_l150_m1_e0homalt
99.3830
98.9218
99.8485
72.6540
7248797248116
54.5455
hfeng-pmm2SNPtvmap_l100_m2_e0homalt
99.8535
99.8589
99.8481
64.9206
9201139201145
35.7143
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.7955
92.0590
99.8481
42.7080
3246280328754
80.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.7955
92.0590
99.8481
42.7080
3246280328754
80.0000
ndellapenna-hhgaSNPtvmap_l150_m0_e0homalt
99.4329
99.0211
99.8481
74.3625
131513131521
50.0000
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9240
100.0000
99.8480
80.1148
657065710
0.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9240
100.0000
99.8480
80.5383
657065710
0.0000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.0804
98.3246
99.8480
50.5717
5986102591395
55.5556
raldana-dualsentieonINDELD1_5HG002complexvarhet
98.9112
97.9918
99.8479
54.6492
20348417203513119
61.2903
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
97.2553
94.7939
99.8479
50.8778
131172131321
50.0000
ckim-isaacSNPtimap_l150_m0_e0homalt
64.3926
47.5190
99.8478
66.4710
13121449131222
100.0000
hfeng-pmm3SNP*func_cdshet
99.9015
99.9552
99.8478
24.3993
11156511153170
0.0000
gduggal-bwavardSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
97.7082
95.6585
99.8477
51.9462
3305150327954
80.0000
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
98.8501
97.8723
99.8476
77.1269
133429131020
0.0000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
98.8126
97.7990
99.8474
77.0523
133330130920
0.0000
hfeng-pmm2SNP*HG002compoundhethet
95.9129
92.2768
99.8474
42.7742
13083109513083203
15.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8728
99.8982
99.8474
55.2916
39274392761
16.6667
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.1094
98.3822
99.8474
70.7576
261543261743
75.0000
hfeng-pmm3SNPtifunc_cdshet
99.9001
99.9530
99.8473
22.7326
850048498130
0.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3126
96.8244
99.8472
79.3514
1045834310458164
25.0000
eyeh-varpipeSNP*map_l250_m2_e0homalt
99.7746
99.7022
99.8472
89.1514
26788261344
100.0000
gduggal-bwafbSNPtvmap_l150_m0_e0homalt
99.0129
98.1928
99.8469
80.0489
130424130422
100.0000
ckim-isaacSNP*HG002complexvar*
95.9550
92.3552
99.8467
16.9098
696714576716970671070847
79.1589
dgrover-gatkSNPtvmap_l150_m1_e0homalt
99.4146
98.9863
99.8466
69.3080
390640390664
66.6667
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4652
99.0868
99.8466
80.5547
651665110
0.0000
gduggal-bwafbSNP*map_l150_m2_e1homalt
99.4055
98.9685
99.8465
74.9037
11705122117051811
61.1111
hfeng-pmm2INDELI1_5HG002complexvar*
99.5522
99.2597
99.8464
56.6743
33116247331595138
74.5098