PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15551-15600 / 86044 show all
ltrigg-rtg2INDELI1_5HG002compoundhethetalt
98.4111
97.0028
99.8609
64.1248
10842335107681515
100.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
100.0000
99.8608
45.9493
21520215233
100.0000
astatham-gatkSNP*map_l100_m0_e0homalt
99.3208
98.7866
99.8608
60.2139
11479141114791612
75.0000
jli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
100.0000
99.8608
46.0035
21520215233
100.0000
hfeng-pmm1SNP*map_siren*
99.7072
99.5541
99.8607
53.5315
14557665214555620364
31.5271
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9535
99.8607
47.4506
21511215133
100.0000
gduggal-snapplatSNP*map_l250_m2_e1homalt
88.3005
79.1391
99.8607
89.4279
2151567215033
100.0000
hfeng-pmm3INDELI1_5*het
99.7016
99.5433
99.8604
59.2337
786803617866111051
46.3636
ltrigg-rtg2SNP*map_l150_m2_e1*
98.7491
97.6622
99.8603
65.5073
3145775331463449
20.4545
jpowers-varprowlSNPtiHG002complexvarhet
99.4252
98.9938
99.8603
18.1914
311597316731170743690
20.6422
cchapple-customSNPtvHG002complexvarhet
99.7615
99.6630
99.8602
21.5432
150223508149954210146
69.5238
hfeng-pmm3SNPtvmap_l100_m2_e1homalt
99.8333
99.8065
99.8602
64.7574
9284189284135
38.4615
hfeng-pmm1SNPtvmap_l100_m2_e1homalt
99.8549
99.8495
99.8602
64.8422
9288149288135
38.4615
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3225
98.7905
99.8601
50.4916
359444357053
60.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
100.0000
99.8600
29.0467
14270142721
50.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
100.0000
99.8600
30.7319
14270142721
50.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8949
99.9299
99.8599
26.8443
14261142622
100.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7896
99.7197
99.8596
27.8116
14234142322
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7545
99.6496
99.8596
26.6735
14225142222
100.0000
gduggal-bwafbSNPtvmap_l100_m2_e1homalt
99.6066
99.3550
99.8595
65.9755
9242609242137
53.8462
egarrison-hhgaSNPtimap_l100_m1_e0*
99.5648
99.2719
99.8594
62.6430
47582349475836731
46.2687
jli-customINDELD1_5*het
99.7840
99.7088
99.8593
56.7542
873192558731312365
52.8455
hfeng-pmm2SNP*map_l100_m1_e0homalt
99.8648
99.8704
99.8593
60.9853
2696835269683819
50.0000
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.1734
94.6284
99.8591
48.1340
191141085191382718
66.6667
dgrover-gatkSNPtifunc_cdshet
99.9118
99.9647
99.8590
25.0066
850138499120
0.0000
hfeng-pmm1SNPtifunc_cdshet
99.9060
99.9530
99.8590
22.2902
850048498120
0.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3683
98.8824
99.8589
49.4773
424748424760
0.0000
hfeng-pmm1SNPtvmap_l100_m2_e0homalt
99.8535
99.8481
99.8589
64.8359
9200149200135
38.4615
gduggal-snapplatSNP*map_l250_m2_e0homalt
88.2609
79.0767
99.8589
89.3960
2124562212333
100.0000
gduggal-snapplatSNPtimap_l150_m1_e0homalt
93.0222
87.0616
99.8589
71.6753
6379948637099
100.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7040
99.5496
99.8589
54.8699
163557416278238
34.7826
hfeng-pmm3SNPtvmap_l100_m2_e0homalt
99.8317
99.8046
99.8588
64.7570
9196189196135
38.4615
astatham-gatkSNP*HG002compoundhet*
99.2284
98.6058
99.8588
41.2826
25462360254553634
94.4444
ltrigg-rtg1SNP***
99.8754
99.8921
99.8587
17.5113
3051330329630515184317267
6.1849
ltrigg-rtg2SNP*map_l150_m2_e0*
98.7380
97.6422
99.8587
65.4099
3110175131104449
20.4545
asubramanian-gatkSNPtimap_l100_m2_e1*
62.6607
45.6542
99.8585
84.1129
2259226893225883212
37.5000
asubramanian-gatkSNPtimap_l125_m0_e0*
36.2073
22.1125
99.8585
94.7728
28229940282244
100.0000
gduggal-bwavardSNP*map_l125_m1_e0homalt
98.6701
97.5096
99.8585
66.2879
16484421162342318
78.2609
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.2816
94.8346
99.8583
45.6289
6334345634197
77.7778
gduggal-snapplatSNP*map_l125_m0_e0homalt
91.2357
83.9839
99.8583
72.7044
56371075563788
100.0000
gduggal-bwafbSNPtvmap_l100_m2_e0homalt
99.6083
99.3597
99.8582
65.9435
9155599155137
53.8462
asubramanian-gatkINDELD1_5HG002complexvarhomalt
99.7403
99.6226
99.8582
60.0860
1055840105651513
86.6667
ltrigg-rtg1INDELI6_15*hetalt
94.9898
90.5742
99.8580
43.9696
774580677381110
90.9091
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.2099
98.5704
99.8579
70.2128
262038281044
100.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5072
99.1591
99.8579
31.1980
141512140522
100.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7595
99.8579
55.0764
2529861253003629
80.5556
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3987
98.9438
99.8577
44.3311
562160561488
100.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.2232
98.5968
99.8577
35.0385
210830210530
0.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.1995
98.5500
99.8576
35.6051
210731210430
0.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8491
99.8406
99.8576
65.2848
1754028175272517
68.0000