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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 306 307 308 309 310 311 312 313 314 ... 1720 1721 » 15451-15500 / 86044 show all
ltrigg-rtg2	SNP	ti	map_l250_m2_e0	het	96.1263	92.6552	99.8676	76.8996	3015	239	3018	4	1	25.0000
ltrigg-rtg2	SNP	ti	map_l150_m0_e0	*	97.8455	95.9038	99.8675	65.1893	7539	322	7538	10	4	40.0000
dgrover-gatk	SNP	tv	map_l125_m2_e1	homalt	99.5624	99.2591	99.8675	67.1759	6029	45	6029	8	5	62.5000
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3623	98.8621	99.8675	43.6567	2259	26	2262	3	0	0.0000
jpowers-varprowl	SNP	ti	func_cds	homalt	99.9052	99.9431	99.8674	21.7810	5272	3	5272	7	7	100.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3317	98.8017	99.8674	38.4766	11296	137	11293	15	3	20.0000
astatham-gatk	SNP	tv	map_siren	*	92.9445	86.9192	99.8674	62.0464	39922	6008	39914	53	21	39.6226
gduggal-snapvard	SNP	tv	map_siren	homalt	98.2279	96.6415	99.8673	55.2791	16661	579	16552	22	13	59.0909
gduggal-bwafb	SNP	tv	map_l125_m2_e1	homalt	99.4877	99.1110	99.8673	71.0512	6020	54	6020	8	6	75.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3051	98.7492	99.8673	37.3573	11290	143	11287	15	0	0.0000
hfeng-pmm1	INDEL	I1_5	HG002complexvar	het	99.4978	99.1313	99.8669	57.6162	18031	158	18012	24	10	41.6667
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	97.5626	95.3621	99.8669	70.0866	3002	146	3002	4	0	0.0000
ltrigg-rtg2	SNP	*	map_l125_m0_e0	*	98.2838	96.7501	99.8669	59.4717	18755	630	18753	25	4	16.0000
hfeng-pmm2	INDEL	I6_15	HG002complexvar	het	98.4267	97.0276	99.8668	58.9949	2285	70	2249	3	2	66.6667
jli-custom	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.5072	95.2564	99.8668	41.1211	2972	148	3000	4	4	100.0000
asubramanian-gatk	SNP	ti	map_l150_m0_e0	*	32.0231	19.0688	99.8668	96.6434	1499	6362	1499	2	2	100.0000
gduggal-bwafb	SNP	ti	segdup	homalt	99.8134	99.7602	99.8666	88.7165	7487	18	7487	10	10	100.0000
eyeh-varpipe	SNP	tv	map_l125_m2_e1	homalt	99.8263	99.7860	99.8666	72.2636	6061	13	5990	8	4	50.0000
hfeng-pmm2	SNP	ti	map_l100_m1_e0	homalt	99.8719	99.8775	99.8664	60.1447	17938	22	17938	24	14	58.3333
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7332	99.6004	99.8664	53.4604	2243	9	2243	3	1	33.3333
gduggal-snapplat	SNP	ti	map_l150_m2_e1	homalt	93.2871	87.5211	99.8663	73.9142	6733	960	6724	9	9	100.0000
ckim-dragen	SNP	*	map_l100_m2_e1	homalt	99.6376	99.4100	99.8663	58.3837	27632	164	27637	37	33	89.1892
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8953	99.9243	99.8662	56.6428	17164	13	17169	23	7	30.4348
eyeh-varpipe	SNP	*	segdup	homalt	99.9005	99.9348	99.8662	89.0870	10736	7	10453	14	14	100.0000
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6440	99.4227	99.8662	57.6502	2239	13	2239	3	0	0.0000
dgrover-gatk	SNP	tv	map_l125_m2_e0	homalt	99.5582	99.2521	99.8662	67.1591	5972	45	5972	8	5	62.5000
hfeng-pmm3	INDEL	I1_5	HG002complexvar	homalt	99.8699	99.8736	99.8662	51.8330	13431	17	13436	18	16	88.8889
rpoplin-dv42	SNP	tv	map_siren	homalt	99.7328	99.5998	99.8662	55.9755	17171	69	17169	23	21	91.3043
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7326	99.5995	99.8661	79.1457	1492	6	1492	2	1	50.0000
gduggal-bwafb	SNP	tv	map_l125_m2_e0	homalt	99.4828	99.1025	99.8660	70.9836	5963	54	5963	8	6	75.0000
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.4626	97.0981	99.8660	55.9944	9804	293	9692	13	8	61.5385
hfeng-pmm1	SNP	ti	map_siren	*	99.7016	99.5376	99.8660	52.2018	99891	464	99878	134	42	31.3433
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5984	99.3324	99.8658	78.7628	1488	10	1488	2	2	100.0000
eyeh-varpipe	SNP	tv	map_l100_m1_e0	homalt	99.8444	99.8231	99.8658	65.0500	9027	16	8931	12	4	33.3333
raldana-dualsentieon	SNP	ti	map_l125_m0_e0	homalt	99.6205	99.3765	99.8657	64.9902	4463	28	4463	6	5	83.3333
hfeng-pmm2	SNP	ti	HG002compoundhet	het	96.7284	93.7822	99.8656	37.2373	8914	591	8916	12	1	8.3333
eyeh-varpipe	SNP	tv	map_l125_m2_e0	homalt	99.8247	99.7839	99.8655	72.1762	6004	13	5941	8	4	50.0000
asubramanian-gatk	SNP	tv	map_l100_m2_e1	*	58.2603	41.1264	99.8655	87.2297	10398	14885	10396	14	2	14.2857
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4191	98.9769	99.8654	39.1534	6675	69	6675	9	3	33.3333
jli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4857	99.1089	99.8653	46.8501	6673	60	6673	9	5	55.5556
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3742	98.8879	99.8652	37.8733	6669	75	6669	9	0	0.0000
jli-custom	SNP	*	map_l125_m0_e0	homalt	99.5817	99.2998	99.8651	65.5375	6665	47	6665	9	9	100.0000
ndellapenna-hhga	SNP	*	map_siren	*	99.5283	99.1937	99.8651	53.0102	145049	1179	145051	196	89	45.4082
ckim-dragen	SNP	*	map_l100_m2_e0	homalt	99.6377	99.4114	99.8650	58.3933	27361	162	27366	37	33	89.1892
gduggal-snapplat	SNP	ti	map_l150_m2_e0	homalt	93.2670	87.4869	99.8649	73.8706	6663	953	6654	9	9	100.0000
hfeng-pmm1	INDEL	D1_5	*	*	99.5052	99.1482	99.8648	57.2252	145495	1250	145547	197	112	56.8528
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8273	99.7901	99.8645	55.6157	14739	31	14740	20	5	25.0000
mlin-fermikit	SNP	*	func_cds	het	99.3878	98.9159	99.8643	18.4193	11040	121	11040	15	0	0.0000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.6513	93.6387	99.8643	55.3874	736	50	736	1	0	0.0000
bgallagher-sentieon	SNP	*	map_l150_m2_e1	homalt	99.6781	99.4927	99.8642	70.7146	11767	60	11767	16	12	75.0000

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