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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 305 306 307 308 309 310 311 312 313 ... 1720 1721 » 15401-15450 / 86044 show all
ndellapenna-hhga	SNP	ti	func_cds	het	99.9118	99.9530	99.8708	22.7256	8500	4	8500	11	0	0.0000
hfeng-pmm2	SNP	*	HG002compoundhet	*	97.7436	95.7052	99.8707	39.1925	24713	1109	24713	32	14	43.7500
hfeng-pmm1	SNP	*	map_l100_m1_e0	homalt	99.8556	99.8408	99.8703	60.9594	26960	43	26960	35	17	48.5714
hfeng-pmm3	SNP	*	map_l100_m1_e0	homalt	99.8518	99.8334	99.8703	60.8633	26958	45	26958	35	17	48.5714
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7409	99.6119	99.8703	78.8245	770	3	770	1	0	0.0000
gduggal-bwafb	SNP	ti	map_l100_m0_e0	homalt	99.4445	99.0224	99.8703	64.5919	7698	76	7698	10	6	60.0000
bgallagher-sentieon	SNP	*	map_l100_m0_e0	homalt	99.6507	99.4320	99.8703	60.0283	11554	66	11554	15	11	73.3333
jli-custom	SNP	*	HG002compoundhet	homalt	99.8794	99.8887	99.8702	35.2217	10770	12	10769	14	12	85.7143
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5364	99.2047	99.8702	65.5442	16840	135	16932	22	12	54.5455
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5364	99.2047	99.8702	65.5442	16840	135	16932	22	12	54.5455
hfeng-pmm2	SNP	ti	map_l100_m2_e1	homalt	99.8756	99.8810	99.8702	62.5670	18472	22	18472	24	14	58.3333
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2056	98.5498	99.8702	37.4713	4621	68	4618	6	0	0.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.8860	81.7168	99.8700	38.3320	733	164	768	1	1	100.0000
astatham-gatk	SNP	ti	map_siren	het	90.2825	82.3747	99.8698	61.4644	51387	10995	51378	67	30	44.7761
ckim-dragen	SNP	*	map_l100_m1_e0	homalt	99.6437	99.4186	99.8698	55.6951	26846	157	26851	35	32	91.4286
ltrigg-rtg1	SNP	tv	map_l100_m0_e0	homalt	99.7918	99.7140	99.8697	63.2094	3835	11	3833	5	2	40.0000
ltrigg-rtg2	SNP	*	map_l150_m1_e0	*	98.7010	97.5595	99.8696	62.6893	29862	747	29864	39	9	23.0769
ltrigg-rtg2	SNP	ti	map_l250_m2_e1	het	96.1485	92.6948	99.8695	77.1012	3058	241	3061	4	1	25.0000
eyeh-varpipe	SNP	tv	map_l100_m2_e1	homalt	99.8487	99.8280	99.8695	67.1866	9286	16	9182	12	4	33.3333
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	97.8767	95.9619	99.8695	26.2226	3826	161	3827	5	4	80.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6200	99.3718	99.8694	32.0414	4587	29	4588	6	2	33.3333
ndellapenna-hhga	SNP	tv	map_l100_m0_e0	homalt	99.6482	99.4280	99.8694	61.5639	3824	22	3824	5	3	60.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.5327	99.1984	99.8692	31.8675	4579	37	4580	6	1	16.6667
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3809	98.8975	99.8690	76.5041	1525	17	1525	2	1	50.0000
hfeng-pmm2	SNP	ti	map_l100_m2_e0	homalt	99.8744	99.8798	99.8689	62.5825	18287	22	18287	24	14	58.3333
dgrover-gatk	SNP	tv	map_l100_m0_e0	homalt	99.4517	99.0380	99.8689	62.1627	3809	37	3809	5	3	60.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8250	99.7812	99.8688	48.0455	2280	5	2283	3	0	0.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4561	99.0468	99.8688	31.9345	4572	44	4568	6	0	0.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8250	99.7812	99.8688	48.1162	2280	5	2283	3	0	0.0000
ckim-isaac	SNP	*	map_siren	*	84.8645	73.7800	99.8686	51.5315	107887	38341	107900	142	41	28.8732
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.0845	94.4515	99.8686	24.7280	749	44	760	1	1	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.2176	94.7037	99.8686	24.8766	751	42	760	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7372	99.6061	99.8685	48.0892	2276	9	2279	3	0	0.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7945	99.7208	99.8684	54.9696	6071	17	6072	8	7	87.5000
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.0178	94.3253	99.8684	24.7525	748	45	759	1	1	100.0000
eyeh-varpipe	SNP	ti	map_l100_m0_e0	homalt	99.8506	99.8328	99.8684	64.9624	7761	13	7590	10	5	50.0000
eyeh-varpipe	SNP	tv	map_l100_m2_e0	homalt	99.8474	99.8264	99.8684	67.1566	9198	16	9105	12	4	33.3333
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6931	99.5186	99.8683	44.6416	2274	11	2275	3	0	0.0000
jlack-gatk	SNP	*	map_l125_m1_e0	homalt	99.2141	98.5685	99.8681	64.3628	16663	242	16663	22	16	72.7273
gduggal-bwafb	SNP	ti	HG002complexvar	*	99.8223	99.7766	99.8681	18.4222	507301	1136	507384	670	291	43.4328
dgrover-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8963	99.9245	99.8680	60.1555	10590	8	10595	14	12	85.7143
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.9070	97.9644	99.8679	59.9259	770	16	756	1	0	0.0000
ltrigg-rtg2	SNP	*	map_l250_m1_e0	*	96.9723	94.2398	99.8679	79.0649	6806	416	6806	9	4	44.4444
cchapple-custom	SNP	ti	*	*	99.8773	99.8866	99.8679	19.3368	2083147	2364	2081936	2754	477	17.3203
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4728	99.0810	99.8678	43.7004	2264	21	2267	3	0	0.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4508	99.0372	99.8678	44.3327	2263	22	2266	3	0	0.0000
jli-custom	SNP	*	*	het	99.9088	99.9498	99.8677	18.9256	1872647	940	1872558	2480	145	5.8468
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4287	98.9934	99.8677	43.4696	2262	23	2265	3	0	0.0000
asubramanian-gatk	SNP	*	map_siren	*	76.4845	61.9738	99.8677	70.7590	90623	55605	90605	120	35	29.1667
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7499	93.8209	99.8677	23.9437	744	49	755	1	1	100.0000

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