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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 303 304 305 306 307 308 309 310 311 ... 1720 1721 » 15301-15350 / 86044 show all
jlack-gatk	SNP	tv	map_l100_m1_e0	homalt	99.3888	98.9052	99.8772	60.2177	8944	99	8944	11	7	63.6364
egarrison-hhga	SNP	*	map_l150_m0_e0	homalt	99.6815	99.4864	99.8772	74.1921	4068	21	4068	5	5	100.0000
ndellapenna-hhga	SNP	tv	map_l150_m2_e0	homalt	99.6933	99.5102	99.8771	72.6980	4063	20	4063	5	4	80.0000
gduggal-bwafb	SNP	*	map_l100_m1_e0	homalt	99.5971	99.3186	99.8771	62.3452	26819	184	26819	33	19	57.5758
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.8722	97.8873	99.8771	70.5393	834	18	813	1	1	100.0000
gduggal-bwafb	SNP	*	map_l100_m2_e1	homalt	99.5977	99.3200	99.8770	64.6290	27607	189	27607	34	20	58.8235
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8975	99.9180	99.8770	52.7132	2437	2	2437	3	0	0.0000
ltrigg-rtg2	SNP	*	map_l150_m0_e0	homalt	99.5584	99.2419	99.8769	71.8698	4058	31	4057	5	4	80.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5978	99.3202	99.8769	36.6057	7305	50	7301	9	4	44.4444
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0651	94.4072	99.8769	35.3752	2397	142	2434	3	3	100.0000
egarrison-hhga	SNP	ti	map_siren	*	99.6715	99.4669	99.8769	52.8764	99820	535	99821	123	54	43.9024
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.5220	86.1761	99.8768	41.7921	773	124	811	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4987	99.1235	99.8768	54.4784	16285	144	16208	20	7	35.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7660	99.6556	99.8767	49.4516	4051	14	4051	5	1	20.0000
bgallagher-sentieon	SNP	ti	map_l150_m1_e0	homalt	99.6923	99.5087	99.8767	68.0791	7291	36	7291	9	7	77.7778
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.3933	85.9532	99.8765	41.6427	771	126	809	1	1	100.0000
asubramanian-gatk	SNP	tv	*	*	98.7904	97.7276	99.8765	24.3508	947655	22035	947577	1172	61	5.2048
ltrigg-rtg2	SNP	tv	map_l250_m1_e0	het	95.0732	90.7107	99.8765	72.2650	1621	166	1618	2	0	0.0000
hfeng-pmm2	SNP	tv	segdup	homalt	99.8919	99.9074	99.8765	90.2428	3235	3	3235	4	4	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8509	99.8255	99.8764	47.5826	4004	7	4039	5	0	0.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3829	11292	4	11292	14	13	92.8571
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3374	11292	4	11292	14	13	92.8571
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3643	11292	4	11292	14	13	92.8571
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9026	99.9292	99.8761	56.3916	11288	8	11288	14	13	92.8571
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	99.1258	98.3867	99.8761	42.1136	3964	65	4032	5	5	100.0000
gduggal-bwafb	SNP	*	map_l150_m0_e0	homalt	99.1750	98.4837	99.8760	78.3354	4027	62	4027	5	4	80.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6886	93.6983	99.8760	34.6569	2379	160	2416	3	3	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8449	99.8139	99.8759	69.1925	4828	9	4828	6	5	83.3333
astatham-gatk	SNP	ti	map_l150_m1_e0	homalt	99.3483	98.8263	99.8759	68.2477	7241	86	7241	9	8	88.8889
gduggal-bwafb	SNP	*	map_l100_m2_e0	homalt	99.5956	99.3169	99.8758	64.6135	27335	188	27335	34	20	58.8235
ltrigg-rtg1	INDEL	I1_5	HG002compoundhet	hetalt	96.8755	94.0503	99.8757	63.2515	10512	665	10446	13	13	100.0000
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	97.4799	95.1964	99.8756	26.6788	6421	324	6423	8	7	87.5000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7823	99.6892	99.8755	54.6328	1604	5	1604	2	1	50.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8134	99.7514	99.8755	42.5661	1605	4	1605	2	2	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6683	99.4621	99.8754	72.2887	2404	13	2404	3	3	100.0000
ckim-isaac	SNP	ti	HG002complexvar	*	96.1858	92.7592	99.8753	15.7158	471622	36815	471809	589	446	75.7216
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7199	99.5649	99.8753	57.4423	1602	7	1602	2	0	0.0000
hfeng-pmm1	INDEL	D1_5	*	homalt	99.8651	99.8549	99.8753	58.6796	48855	71	48859	61	60	98.3607
jlack-gatk	SNP	ti	map_l150_m1_e0	homalt	99.0574	98.2530	99.8751	68.9978	7199	128	7199	9	7	77.7778
ltrigg-rtg2	SNP	ti	map_l150_m0_e0	het	96.9091	94.1142	99.8751	60.5146	4797	300	4797	6	0	0.0000
dgrover-gatk	SNP	*	map_l150_m1_e0	homalt	99.5103	99.1484	99.8749	68.8906	11177	96	11177	14	10	71.4286
gduggal-bwafb	SNP	*	map_l125_m1_e0	homalt	99.4923	99.1127	99.8748	68.0895	16755	150	16755	21	13	61.9048
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1822	92.7531	99.8747	34.7506	2355	184	2391	3	3	100.0000
egarrison-hhga	SNP	*	func_cds	het	99.9239	99.9731	99.8747	24.7221	11158	3	11158	14	0	0.0000
ndellapenna-hhga	SNP	ti	map_siren	*	99.5376	99.2028	99.8746	51.9628	99555	800	99557	125	60	48.0000
raldana-dualsentieon	SNP	ti	map_l250_m1_e0	homalt	99.4375	99.0044	99.8745	84.1493	1591	16	1591	2	1	50.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0605	98.2598	99.8745	43.2288	1581	28	1591	2	2	100.0000
ltrigg-rtg2	SNP	ti	map_l150_m1_e0	het	98.1622	96.5077	99.8745	59.1812	11938	432	11940	15	1	6.6667
jli-custom	SNP	ti	map_l250_m1_e0	homalt	99.3746	98.8799	99.8743	84.2895	1589	18	1589	2	2	100.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	het	99.6767	99.4799	99.8743	56.3731	20657	108	20661	26	12	46.1538

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