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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 302 303 304 305 306 307 308 309 310 ... 1720 1721 » 15251-15300 / 86044 show all
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.9198	99.9599	99.8798	58.8255	2493	1	2493	3	1	33.3333
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.1183	98.3683	99.8798	44.5703	844	14	831	1	0	0.0000
bgallagher-sentieon	SNP	ti	HG002compoundhet	*	99.8512	99.8226	99.8798	35.5355	17447	31	17445	21	14	66.6667
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3112	98.7493	99.8796	50.2546	6632	84	6634	8	2	25.0000
ltrigg-rtg1	SNP	ti	map_l100_m2_e0	homalt	99.8005	99.7214	99.8796	61.9278	18258	51	18258	22	22	100.0000
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8633	99.8472	99.8795	59.6020	55546	85	55530	67	38	56.7164
dgrover-gatk	SNP	*	map_l150_m2_e0	homalt	99.5153	99.1538	99.8795	71.2083	11600	99	11600	14	10	71.4286
jlack-gatk	SNP	tv	map_l100_m2_e0	homalt	99.4002	98.9255	99.8795	62.7206	9115	99	9115	11	7	63.6364
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0950	92.5870	99.8794	36.4264	2448	196	2484	3	3	100.0000
astatham-gatk	SNP	*	HG002compoundhet	homalt	99.8748	99.8702	99.8794	34.8528	10768	14	10763	13	12	92.3077
dgrover-gatk	SNP	*	HG002compoundhet	homalt	99.8980	99.9165	99.8794	34.8304	10773	9	10768	13	12	92.3077
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	88.2006	78.9671	99.8794	42.7486	841	224	828	1	1	100.0000
gduggal-bwafb	SNP	*	map_l125_m2_e1	homalt	99.4990	99.1216	99.8793	70.3837	17378	154	17378	21	13	61.9048
ckim-dragen	SNP	ti	map_l100_m2_e0	homalt	99.6194	99.3610	99.8792	57.3994	18192	117	18197	22	20	90.9091
hfeng-pmm2	SNP	*	segdup	homalt	99.9116	99.9441	99.8791	88.8962	10737	6	10737	13	13	100.0000
egarrison-hhga	SNP	*	map_siren	*	99.6583	99.4385	99.8791	53.8224	145407	821	145408	176	78	44.3182
ckim-vqsr	SNP	tv	HG002compoundhet	homalt	98.7009	97.5502	99.8791	43.2979	3305	83	3304	4	3	75.0000
gduggal-snapplat	SNP	ti	segdup	homalt	99.4715	99.0673	99.8790	87.9842	7435	70	7429	9	6	66.6667
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9325	86.8895	99.8788	38.1155	2366	357	2473	3	3	100.0000
astatham-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2005	98.5314	99.8788	66.3539	17310	258	17301	21	11	52.3810
asubramanian-gatk	SNP	ti	map_l100_m1_e0	*	61.7256	44.6642	99.8787	83.4799	21408	26523	21404	26	10	38.4615
ndellapenna-hhga	SNP	tv	map_l150_m2_e1	homalt	99.6971	99.5162	99.8786	72.6929	4114	20	4114	5	4	80.0000
mlin-fermikit	SNP	*	*	hetalt	97.1091	94.4891	99.8786	32.2368	823	48	823	1	1	100.0000
mlin-fermikit	SNP	tv	*	hetalt	97.1091	94.4891	99.8786	32.2368	823	48	823	1	1	100.0000
qzeng-custom	SNP	*	HG002compoundhet	hetalt	98.5292	97.2158	99.8786	21.9697	838	24	823	1	1	100.0000
qzeng-custom	SNP	tv	HG002compoundhet	hetalt	98.5292	97.2158	99.8786	21.9697	838	24	823	1	1	100.0000
ltrigg-rtg2	SNP	ti	map_l125_m1_e0	*	98.9923	98.1217	99.8786	58.7041	28784	551	28785	35	10	28.5714
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.4149	87.7369	99.8786	37.6230	787	110	823	1	1	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3754	98.8773	99.8785	57.1429	2466	28	2466	3	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6765	99.4754	99.8784	28.4513	2465	13	2464	3	0	0.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	het	99.6583	99.4392	99.8784	58.1585	18087	102	18064	22	13	59.0909
hfeng-pmm3	INDEL	D1_5	*	het	99.5975	99.3183	99.8783	55.2507	86977	597	86982	106	53	50.0000
rpoplin-dv42	SNP	*	map_siren	homalt	99.7831	99.6882	99.8783	53.6066	54984	172	54983	67	63	94.0299
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2670	98.6631	99.8783	77.1278	6568	89	6568	8	5	62.5000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.5553	95.3380	99.8782	41.5658	818	40	820	1	1	100.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.5950	86.3019	99.8782	37.9441	2350	373	2460	3	3	100.0000
gduggal-bwafb	SNP	*	map_l125_m2_e0	homalt	99.4945	99.1137	99.8782	70.3251	17221	154	17221	21	13	61.9048
asubramanian-gatk	INDEL	D1_5	HG002complexvar	het	99.2391	98.6082	99.8781	56.4759	20476	289	20484	25	15	60.0000
ltrigg-rtg2	SNP	ti	map_l100_m0_e0	*	98.7646	97.6758	99.8779	53.5389	21265	506	21269	26	7	26.9231
ltrigg-rtg2	SNP	*	map_l250_m1_e0	homalt	99.6541	99.4316	99.8777	84.3152	2449	14	2449	3	3	100.0000
eyeh-varpipe	SNP	ti	segdup	homalt	99.9189	99.9600	99.8777	88.4551	7502	3	7351	9	9	100.0000
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	het	99.3867	98.9004	99.8777	56.7573	17989	200	17970	22	13	59.0909
asubramanian-gatk	SNP	tv	map_l100_m1_e0	*	57.1254	40.0024	99.8777	86.7426	9801	14700	9799	12	2	16.6667
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8835	99.8894	99.8776	53.9498	17158	19	17135	21	9	42.8571
hfeng-pmm3	SNP	ti	map_l100_m1_e0	homalt	99.8636	99.8497	99.8775	60.0521	17933	27	17933	22	12	54.5455
hfeng-pmm1	SNP	ti	map_l100_m1_e0	homalt	99.8580	99.8385	99.8775	60.1505	17931	29	17931	22	12	54.5455
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.2342	85.6776	99.8774	37.7987	2333	390	2444	3	3	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.9182	99.9590	99.8774	49.7020	2438	1	2444	3	0	0.0000
astatham-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8868	99.8962	99.8774	60.2109	10587	11	10592	13	11	84.6154
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.9886	98.1155	99.8774	55.5677	2447	47	2443	3	1	33.3333

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