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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 301 302 303 304 305 306 307 308 309 ... 1720 1721 » 15201-15250 / 86044 show all
egarrison-hhga	SNP	tv	map_siren	*	99.6246	99.3686	99.8818	55.8072	45640	290	45640	54	25	46.2963
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.5845	845	7	845	1	1	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.7237	845	7	845	1	0	0.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.2350	94.7249	99.8818	43.0518	3340	186	3381	4	4	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.2350	94.7249	99.8818	43.0518	3340	186	3381	4	4	100.0000
astatham-gatk	SNP	ti	map_l150_m2_e1	homalt	99.3663	98.8561	99.8818	70.6476	7605	88	7605	9	8	88.8889
ltrigg-rtg2	SNP	ti	map_l150_m2_e1	*	98.7779	97.6982	99.8816	65.7932	20246	477	20250	24	7	29.1667
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.0047	94.2890	99.8816	37.0370	2493	151	2530	3	3	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8126	99.7437	99.8815	55.8039	25294	65	25297	30	17	56.6667
hfeng-pmm3	INDEL	D1_5	*	homalt	99.8825	99.8835	99.8815	58.1721	48869	57	48874	58	56	96.5517
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1914	92.7644	99.8814	32.5739	1500	117	1685	2	2	100.0000
gduggal-bwafb	SNP	ti	map_l125_m1_e0	homalt	99.4956	99.1127	99.8814	67.6839	10947	98	10947	13	7	53.8462
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8222	99.7630	99.8814	64.1429	1684	4	1684	2	2	100.0000
bgallagher-sentieon	SNP	ti	map_l150_m2_e0	homalt	99.6909	99.5011	99.8814	70.4694	7578	38	7578	9	7	77.7778
bgallagher-sentieon	SNP	*	map_l125_m1_e0	homalt	99.7275	99.5741	99.8813	63.4132	16833	72	16833	20	15	75.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8665	99.8517	99.8813	39.6598	6734	10	6732	8	2	25.0000
dgrover-gatk	SNP	tv	*	*	99.9211	99.9611	99.8812	22.3092	969313	377	969227	1153	81	7.0252
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6736	99.4668	99.8812	64.0938	1679	9	1682	2	2	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7531	99.6254	99.8811	52.9851	25264	95	25209	30	21	70.0000
jli-custom	INDEL	I1_5	HG002complexvar	homalt	99.8996	99.9182	99.8811	52.2818	13437	11	13441	16	14	87.5000
jlack-gatk	SNP	ti	map_l150_m2_e1	homalt	99.0828	98.2972	99.8811	71.3252	7562	131	7562	9	7	77.7778
hfeng-pmm1	SNP	ti	map_l100_m2_e1	homalt	99.8621	99.8432	99.8810	62.5754	18465	29	18465	22	12	54.5455
hfeng-pmm3	SNP	ti	map_l100_m2_e1	homalt	99.8675	99.8540	99.8810	62.4833	18467	27	18467	22	12	54.5455
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5867	99.2941	99.8810	43.2816	844	6	839	1	0	0.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8441	99.8073	99.8810	33.7603	6732	13	6714	8	1	12.5000
ltrigg-rtg1	SNP	ti	map_l100_m2_e1	homalt	99.8025	99.7242	99.8809	61.9106	18443	51	18443	22	22	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.5585	93.4500	99.8809	40.1426	1655	116	1677	2	2	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6831	93.6838	99.8808	36.3590	2477	167	2514	3	3	100.0000
cchapple-custom	SNP	*	HG002complexvar	het	99.7839	99.6872	99.8808	18.7433	464041	1456	463256	553	394	71.2477
dgrover-gatk	SNP	*	map_l150_m2_e1	homalt	99.5206	99.1629	99.8808	71.2164	11728	99	11728	14	10	71.4286
astatham-gatk	SNP	*	map_l125_m1_e0	homalt	99.4624	99.0476	99.8807	63.5573	16744	161	16744	20	16	80.0000
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.8777	97.8947	99.8807	50.7349	837	18	837	1	0	0.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4680	99.0588	99.8807	41.3986	842	8	837	1	0	0.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.8777	97.8947	99.8807	46.8948	837	18	837	1	0	0.0000
astatham-gatk	SNP	ti	map_l150_m2_e0	homalt	99.3599	98.8445	99.8806	70.6148	7528	88	7528	9	8	88.8889
jlack-gatk	SNP	tv	map_l100_m2_e1	homalt	99.4059	98.9357	99.8806	62.6933	9203	99	9203	11	7	63.6364
ltrigg-rtg2	SNP	ti	map_l150_m2_e0	*	98.7701	97.6843	99.8804	65.6662	20037	475	20041	24	7	29.1667
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.9336	98.0047	99.8804	84.7751	835	17	835	1	1	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.6181	93.5621	99.8804	39.4313	3299	227	3340	4	4	100.0000
ckim-dragen	SNP	ti	map_l100_m2_e1	homalt	99.6178	99.3565	99.8804	57.3860	18375	119	18380	22	20	90.9091
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6181	93.5621	99.8804	39.4313	3299	227	3340	4	4	100.0000
eyeh-varpipe	SNP	*	map_l150_m1_e0	homalt	99.8338	99.7871	99.8804	73.5129	11249	24	10861	13	8	61.5385
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.6029	93.5337	99.8803	39.4384	3298	228	3339	4	4	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6029	93.5337	99.8803	39.4384	3298	228	3339	4	4	100.0000
hfeng-pmm2	SNP	ti	segdup	homalt	99.9201	99.9600	99.8802	88.1936	7502	3	7502	9	9	100.0000
ndellapenna-hhga	SNP	tv	map_l125_m1_e0	homalt	99.7180	99.5563	99.8802	65.8321	5834	26	5834	7	6	85.7143
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.1648	92.7160	99.8800	39.9063	1642	129	1665	2	2	100.0000
jlack-gatk	SNP	ti	map_l150_m2_e0	homalt	99.0801	98.2931	99.8799	71.3088	7486	130	7486	9	7	77.7778
hfeng-pmm3	SNP	ti	map_l100_m2_e0	homalt	99.8662	99.8525	99.8798	62.5049	18282	27	18282	22	12	54.5455
hfeng-pmm1	SNP	ti	map_l100_m2_e0	homalt	99.8607	99.8416	99.8798	62.5925	18280	29	18280	22	12	54.5455

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