PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 299 300 301 302 303 304 305 306 307 ... 1720 1721 » 15101-15150 / 86044 show all
eyeh-varpipe	SNP	*	map_l150_m2_e1	homalt	99.8415	99.7971	99.8860	75.5645	11803	24	11393	13	8	61.5385
gduggal-bwafb	SNP	ti	map_l100_m2_e1	homalt	99.5933	99.3025	99.8858	63.9101	18365	129	18365	21	13	61.9048
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	95.8055	92.0455	99.8858	53.9432	891	77	875	1	1	100.0000
gduggal-bwafb	SNP	ti	map_l125_m2_e1	homalt	99.5050	99.1272	99.8857	70.0171	11358	100	11358	13	7	53.8462
ndellapenna-hhga	SNP	tv	func_cds	*	99.9314	99.9771	99.8857	28.0901	4370	1	4370	5	0	0.0000
eyeh-varpipe	SNP	ti	map_l100_m1_e0	homalt	99.8788	99.8719	99.8856	62.1452	17937	23	17464	20	12	60.0000
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3785	98.8765	99.8856	58.5898	55006	625	54996	63	10	15.8730
bgallagher-sentieon	SNP	*	map_l125_m2_e1	homalt	99.7315	99.5779	99.8856	66.0476	17458	74	17458	20	15	75.0000
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7997	99.7140	99.8855	65.5220	1743	5	1745	2	1	50.0000
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8658	99.8462	99.8855	53.8968	27916	43	27913	32	19	59.3750
ckim-vqsr	SNP	tv	*	*	99.1585	98.4420	99.8855	27.4583	954582	15108	954496	1094	57	5.2102
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.8267	90.2557	99.8855	32.3046	4307	465	4360	5	4	80.0000
eyeh-varpipe	SNP	ti	map_l250_m2_e1	homalt	99.8298	99.7743	99.8854	88.9822	1768	4	1743	2	2	100.0000
gduggal-bwafb	SNP	ti	map_l250_m2_e1	homalt	99.0324	98.1941	99.8852	88.8818	1740	32	1740	2	2	100.0000
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.5423	99.8852	59.7783	1740	8	1740	2	1	50.0000
hfeng-pmm3	SNP	*	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
jli-custom	SNP	*	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1791	87.3169	99.8851	40.5059	3339	485	3477	4	4	100.0000
bgallagher-sentieon	SNP	ti	*	het	99.9232	99.9613	99.8851	18.4052	1281395	496	1281341	1474	76	5.1560
jli-custom	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9557	99.8850	56.3788	11291	5	11291	13	12	92.3077
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6272	99.3707	99.8850	65.1363	1737	11	1737	2	1	50.0000
astatham-gatk	SNP	*	map_l125_m2_e1	homalt	99.4760	99.0703	99.8850	66.1765	17369	163	17369	20	16	80.0000
eyeh-varpipe	SNP	*	map_l150_m2_e0	homalt	99.8398	99.7949	99.8849	75.5076	11675	24	11277	13	8	61.5385
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8578	99.8307	99.8849	56.2250	14745	25	14747	17	4	23.5294
jlack-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5984	99.3135	99.8849	60.1010	1736	12	1736	2	2	100.0000
raldana-dualsentieon	SNP	*	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
raldana-dualsentieon	SNP	tv	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
hfeng-pmm1	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.9701	86.9508	99.8848	40.2923	3325	499	3468	4	4	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8103	99.7360	99.8847	56.3092	14731	39	14733	17	4	23.5294
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.7599	95.7237	99.8847	53.2615	873	39	866	1	1	100.0000
gduggal-bwafb	SNP	ti	map_l125_m2_e0	homalt	99.5006	99.1196	99.8847	69.9640	11258	100	11258	13	7	53.8462
raldana-dualsentieon	SNP	ti	map_l250_m2_e0	homalt	99.4834	99.0852	99.8847	85.3537	1733	16	1733	2	1	50.0000
jli-custom	SNP	ti	map_l250_m2_e0	homalt	99.4256	98.9708	99.8846	85.5643	1731	18	1731	2	2	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5281	93.3899	99.8846	35.7196	1540	109	1731	2	2	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5605	93.4506	99.8846	36.0517	1541	108	1731	2	2	100.0000
gduggal-bwafb	SNP	ti	map_l100_m2_e0	homalt	99.5892	99.2954	99.8846	63.9034	18180	129	18180	21	13	61.9048
eyeh-varpipe	SNP	*	map_l100_m1_e0	homalt	99.8701	99.8556	99.8846	63.0607	26964	39	25962	30	16	53.3333
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	96.9007	94.0899	99.8846	27.3413	2595	163	2596	3	3	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5928	93.5112	99.8845	36.3837	1542	107	1729	2	2	100.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e0	homalt	99.7291	99.5741	99.8845	66.0253	17301	74	17301	20	15	75.0000
ndellapenna-hhga	SNP	tv	map_l125_m2_e1	homalt	99.7279	99.5719	99.8844	68.5879	6048	26	6048	7	6	85.7143
ltrigg-rtg1	SNP	*	map_l150_m1_e0	homalt	99.7513	99.6186	99.8844	70.3814	11230	43	11232	13	13	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7975	99.7110	99.8843	36.2126	1725	5	1726	2	2	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5687	99.2552	99.8842	53.3003	14660	110	14664	17	12	70.5882
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7686	99.6532	99.8842	35.8231	1724	6	1725	2	2	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7395	99.5954	99.8841	36.0267	1723	7	1724	2	2	100.0000
hfeng-pmm3	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.6249	86.3494	99.8841	40.2114	3302	522	3447	4	4	100.0000
hfeng-pmm1	INDEL	I1_5	HG002complexvar	hetalt	98.1752	96.5238	99.8841	71.0548	1666	60	1724	2	2	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge