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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 296 297 298 299 300 301 302 303 304 ... 1720 1721 » 14951-15000 / 86044 show all
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.1948	98.5039	99.8954	68.1029	9547	145	9547	10	9	90.0000
asubramanian-gatk	SNP	*	*	*	98.9379	97.9985	99.8954	21.0150	2993480	61139	2993343	3133	150	4.7877
dgrover-gatk	SNP	ti	map_l150_m2_e1	homalt	99.5631	99.2331	99.8953	71.0135	7634	59	7634	8	6	75.0000
dgrover-gatk	INDEL	I1_5	HG002complexvar	het	99.7798	99.6646	99.8952	58.2404	18128	61	18108	19	9	47.3684
jlack-gatk	SNP	*	map_l100_m1_e0	homalt	99.3858	98.8816	99.8952	58.5121	26701	302	26701	28	22	78.5714
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8428	99.7906	99.8952	79.5848	953	2	953	1	0	0.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8428	99.7906	99.8952	79.6675	953	2	953	1	0	0.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7904	99.6859	99.8951	79.4035	952	3	952	1	1	100.0000
ndellapenna-hhga	SNP	*	map_l125_m0_e0	homalt	99.5815	99.2700	99.8951	66.7961	6663	49	6663	7	6	85.7143
ltrigg-rtg2	SNP	tv	HG002complexvar	het	99.8062	99.7174	99.8951	21.1944	150308	426	150523	158	48	30.3797
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7378	99.5812	99.8950	80.4517	951	4	951	1	1	100.0000
ltrigg-rtg1	SNP	ti	map_l125_m2_e1	homalt	99.7553	99.6160	99.8950	68.0185	11414	44	11415	12	12	100.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7960	99.6973	99.8950	55.4424	17125	52	17126	18	14	77.7778
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7378	99.5812	99.8950	79.8902	951	4	951	1	0	0.0000
astatham-gatk	INDEL	I1_5	HG002complexvar	het	99.6251	99.3568	99.8949	58.0548	18072	117	18051	19	9	47.3684
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8687	99.8426	99.8949	39.6597	11415	18	11408	12	3	25.0000
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3659	98.8427	99.8947	68.5558	30405	356	30350	32	26	81.2500
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8091	97.7471	99.8946	29.7927	1909	44	1895	2	2	100.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e0	homalt	99.8182	99.7420	99.8945	62.4790	27452	71	27451	29	26	89.6552
gduggal-bwafb	SNP	*	map_l125_m0_e0	homalt	99.3333	98.7783	99.8945	72.5403	6630	82	6630	7	6	85.7143
rpoplin-dv42	SNP	ti	func_cds	het	99.9236	99.9530	99.8942	23.9564	8500	4	8498	9	2	22.2222
dgrover-gatk	SNP	ti	map_l150_m2_e0	homalt	99.5587	99.2253	99.8942	70.9853	7557	59	7557	8	6	75.0000
asubramanian-gatk	SNP	*	segdup	homalt	98.2111	96.5838	99.8941	88.4606	10376	367	10376	11	10	90.9091
ltrigg-rtg1	SNP	ti	map_l125_m2_e0	homalt	99.7531	99.6126	99.8940	67.9785	11314	44	11314	12	12	100.0000
ltrigg-rtg2	SNP	ti	*	*	99.8963	99.8985	99.8940	15.8136	2083396	2116	2083301	2210	180	8.1448
astatham-gatk	SNP	*	map_siren	*	93.7139	88.2540	99.8939	58.6796	129052	17176	129029	137	67	48.9051
ckim-isaac	SNP	ti	map_l150_m2_e1	homalt	65.7188	48.9666	99.8939	70.0833	3767	3926	3767	4	4	100.0000
ltrigg-rtg1	SNP	tv	map_l250_m2_e1	homalt	99.6822	99.4715	99.8938	87.1662	941	5	941	1	1	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4189	98.9485	99.8938	85.6381	941	10	941	1	1	100.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9380	99.8938	56.3777	11289	7	11284	12	11	91.6667
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9292	99.9646	99.8938	56.3468	11292	4	11292	12	11	91.6667
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3658	98.8433	99.8937	85.6380	940	11	940	1	0	0.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3658	98.8433	99.8937	85.4985	940	11	940	1	1	100.0000
eyeh-varpipe	SNP	tv	map_siren	homalt	99.8859	99.8782	99.8937	58.0270	17219	21	16916	18	8	44.4444
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3658	98.8433	99.8937	85.4985	940	11	940	1	1	100.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8805	99.8672	99.8937	56.0776	11281	15	11280	12	12	100.0000
hfeng-pmm3	SNP	ti	HG002compoundhet	*	98.2879	96.7330	99.8937	34.5867	16907	571	16909	18	8	44.4444
hfeng-pmm2	SNP	ti	HG002compoundhet	*	98.2110	96.5843	99.8935	34.1246	16881	597	16883	18	7	38.8889
eyeh-varpipe	SNP	*	map_l125_m2_e1	homalt	99.8554	99.8175	99.8934	71.0933	17500	32	16871	18	10	55.5556
ltrigg-rtg1	INDEL	I1_5	HG002complexvar	homalt	99.5102	99.1299	99.8933	45.8849	13330	117	13110	14	9	64.2857
gduggal-bwavard	SNP	ti	map_l100_m2_e1	homalt	98.5250	97.1937	99.8932	62.3163	17975	519	17773	19	15	78.9474
raldana-dualsentieon	SNP	*	HG002compoundhet	het	95.9874	92.3755	99.8932	43.8424	13097	1081	13096	14	7	50.0000
raldana-dualsentieon	SNP	tv	HG002compoundhet	*	96.9959	94.2620	99.8931	47.1699	8411	512	8410	9	5	55.5556
dgrover-gatk	SNP	*	map_l125_m1_e0	homalt	99.6085	99.3256	99.8929	63.9547	16791	114	16791	18	13	72.2222
ltrigg-rtg1	SNP	tv	map_l250_m2_e0	homalt	99.6791	99.4664	99.8928	87.0650	932	5	932	1	1	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.6267	91.7101	99.8927	27.2780	3695	334	3723	4	3	75.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.8310	97.7918	99.8926	85.6659	930	21	930	1	1	100.0000
eyeh-varpipe	SNP	*	map_l125_m2_e0	homalt	99.8542	99.8158	99.8925	71.0277	17343	32	16728	18	10	55.5556
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.2259	98.5684	99.8923	66.7145	1859	27	1855	2	2	100.0000
ckim-isaac	SNP	ti	map_siren	*	86.1284	75.6983	99.8922	49.9174	75967	24388	75975	82	16	19.5122

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