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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 295 296 297 298 299 300 301 302 303 ... 1720 1721 » 14901-14950 / 86044 show all
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7217	99.5441	99.8999	60.0411	6987	32	6987	7	4	57.1429
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6626	99.4266	99.8998	45.8345	3988	23	3988	4	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5873	99.2770	99.8996	46.3020	3982	29	3982	4	0	0.0000
astatham-gatk	SNP	ti	map_l125_m1_e0	homalt	99.4818	99.0675	99.8996	63.1497	10942	103	10942	11	10	90.9091
jmaeng-gatk	SNP	*	map_l150_m0_e0	homalt	65.4719	48.6916	99.8996	84.7432	1991	2098	1991	2	2	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	97.7476	95.6863	99.8995	66.9763	5967	269	5967	6	5	83.3333
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	83.9311	72.3642	99.8993	31.6116	906	346	992	1	1	100.0000
ltrigg-rtg1	SNP	ti	*	*	99.8970	99.8948	99.8992	16.3223	2083318	2194	2083241	2102	174	8.2778
jlack-gatk	SNP	ti	map_l125_m1_e0	homalt	99.2298	98.5695	99.8991	63.8084	10887	158	10887	11	9	81.8182
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7844	99.6701	99.8990	60.1508	10875	36	10875	11	9	81.8182
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0973	98.3085	99.8990	63.5493	988	17	989	1	1	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.7096	93.7179	99.8985	40.2466	2924	196	2953	3	3	100.0000
astatham-gatk	INDEL	D1_5	HG002complexvar	het	99.6863	99.4751	99.8985	56.1634	20656	109	20662	21	12	57.1429
ckim-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.7267	93.7500	99.8985	40.2385	2925	195	2954	3	3	100.0000
raldana-dualsentieon	SNP	tv	map_l150_m1_e0	homalt	99.7335	99.5692	99.8983	67.6642	3929	17	3929	4	2	50.0000
jlack-gatk	SNP	*	map_l100_m2_e1	homalt	99.3962	98.8991	99.8982	60.9989	27490	306	27490	28	22	78.5714
jli-custom	SNP	tv	map_l150_m1_e0	homalt	99.6698	99.4425	99.8982	67.6388	3924	22	3924	4	4	100.0000
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.5213	93.3654	99.8981	44.6324	2913	207	2942	3	3	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4459	98.9979	99.8981	48.0313	11756	119	11761	12	6	50.0000
gduggal-bwavard	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.7481	97.6242	99.8981	43.0461	9862	240	9806	10	9	90.0000
hfeng-pmm1	SNP	*	HG002compoundhet	homalt	99.9026	99.9073	99.8980	34.9324	10772	10	10772	11	11	100.0000
hfeng-pmm1	SNP	*	segdup	homalt	99.9256	99.9535	99.8977	88.8973	10738	5	10738	11	11	100.0000
eyeh-varpipe	SNP	ti	map_l125_m1_e0	homalt	99.8628	99.8280	99.8977	68.2342	11026	19	10743	11	6	54.5455
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8882	99.8789	99.8975	38.7986	10719	13	10717	11	5	45.4545
ckim-gatk	INDEL	I16_PLUS	HG002compoundhet	hetalt	95.8494	92.1166	99.8975	44.7808	1928	165	1950	2	2	100.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4763	99.0588	99.8974	52.8829	3894	37	3894	4	0	0.0000
raldana-dualsentieon	SNP	tv	map_l125_m1_e0	homalt	99.7865	99.6758	99.8974	63.2172	5841	19	5841	6	3	50.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3031	98.7158	99.8974	47.9345	2921	38	2921	3	1	33.3333
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	hetalt	95.7976	92.0210	99.8974	44.8061	1926	167	1948	2	2	100.0000
jli-custom	SNP	tv	map_l125_m1_e0	homalt	99.7265	99.5563	99.8973	63.1639	5834	26	5834	6	5	83.3333
jlack-gatk	SNP	*	HG002complexvar	het	99.8914	99.8855	99.8973	19.1615	464964	533	464834	478	152	31.7992
jlack-gatk	SNP	*	map_l100_m2_e0	homalt	99.3957	98.8991	99.8972	61.0320	27220	303	27220	28	22	78.5714
ckim-gatk	SNP	*	HG002compoundhet	homalt	99.4644	99.0354	99.8971	35.0629	10678	104	10677	11	10	90.9091
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6915	99.4869	99.8970	58.9754	28115	145	28118	29	17	58.6207
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7811	99.6656	99.8969	59.9463	3874	13	3874	4	4	100.0000
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.7824	97.6925	99.8969	31.5687	3895	92	3874	4	4	100.0000
hfeng-pmm2	INDEL	D1_5	HG002complexvar	het	98.9180	97.9581	99.8969	54.5187	20341	424	20346	21	14	66.6667
dgrover-gatk	SNP	*	map_l125_m2_e1	homalt	99.6110	99.3269	99.8967	66.5258	17414	118	17414	18	13	72.2222
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5721	99.2498	99.8965	56.0085	28048	212	27998	29	16	55.1724
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8449	99.7933	99.8965	69.7243	4827	10	4827	5	3	60.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7288	99.5616	99.8965	59.3927	3861	17	3861	4	0	0.0000
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5679	99.2416	99.8964	30.1737	916	7	964	1	1	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	homalt	99.5677	99.2411	99.8964	59.9180	7715	59	7715	8	6	75.0000
ndellapenna-hhga	SNP	*	HG002complexvar	homalt	99.8626	99.8292	99.8960	19.9404	288081	493	288110	300	268	89.3333
dgrover-gatk	SNP	*	map_l125_m2_e0	homalt	99.6075	99.3209	99.8958	66.5083	17257	118	17257	18	13	72.2222
egarrison-hhga	SNP	tv	map_l100_m0_e0	homalt	99.7265	99.5580	99.8956	63.0055	3829	17	3829	4	3	75.0000
raldana-dualsentieon	SNP	tv	map_l100_m0_e0	homalt	99.7265	99.5580	99.8956	59.9142	3829	17	3829	4	2	50.0000
jli-custom	SNP	tv	map_l100_m0_e0	homalt	99.6481	99.4020	99.8955	59.7962	3823	23	3823	4	4	100.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e1	homalt	99.8200	99.7446	99.8955	62.4711	27725	71	27724	29	26	89.6552
dgrover-gatk	SNP	*	func_cds	*	99.9284	99.9614	99.8954	24.8199	18143	7	18140	19	0	0.0000

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