PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 294 295 296 297 298 299 300 301 302 ... 1720 1721 » 14851-14900 / 86044 show all
raldana-dualsentieon	SNP	*	map_l150_m1_e0	homalt	99.7067	99.5121	99.9020	67.3803	11218	55	11218	11	8	72.7273
ndellapenna-hhga	SNP	*	map_l150_m1_e0	homalt	99.6799	99.4589	99.9020	69.8014	11212	61	11212	11	10	90.9091
eyeh-varpipe	SNP	ti	map_l150_m1_e0	homalt	99.8623	99.8226	99.9020	73.1001	7314	13	7136	7	5	71.4286
gduggal-bwaplat	INDEL	D1_5	segdup	*	95.9962	92.3844	99.9019	96.4456	1019	84	1018	1	0	0.0000
ckim-dragen	SNP	tv	HG002complexvar	het	99.9058	99.9098	99.9019	22.2740	150595	136	150740	148	70	47.2973
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2263	98.5599	99.9019	64.0348	17315	253	17306	17	4	23.5294
jlack-gatk	SNP	ti	map_l125_m2_e0	homalt	99.2423	98.5913	99.9019	66.3888	11198	160	11198	11	9	81.8182
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9116	99.9214	99.9018	54.3272	10170	8	10170	10	10	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9607	99.9018	54.3175	10174	4	10174	10	10	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8282	99.7547	99.9018	44.2986	4067	10	4070	4	1	25.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8282	99.7547	99.9018	44.3519	4067	10	4070	4	1	25.0000
ltrigg-rtg1	INDEL	I1_5	*	homalt	99.7620	99.6227	99.9017	50.6392	60199	228	59978	59	47	79.6610
jlack-gatk	INDEL	I1_5	HG002compoundhet	hetalt	94.9037	90.3820	99.9017	57.2515	10102	1075	10162	10	9	90.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.7790	99.6566	99.9017	44.3228	4063	14	4066	4	1	25.0000
raldana-dualsentieon	SNP	tv	map_l150_m2_e0	homalt	99.7424	99.5836	99.9017	70.2246	4066	17	4066	4	2	50.0000
jli-custom	SNP	tv	map_l150_m2_e0	homalt	99.6809	99.4612	99.9016	70.2372	4061	22	4061	4	4	100.0000
gduggal-bwavard	SNP	ti	map_l100_m1_e0	homalt	98.5262	97.1882	99.9016	59.9578	17455	505	17256	17	13	76.4706
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.7544	99.6076	99.9016	41.9475	4061	16	4062	4	1	25.0000
jli-custom	INDEL	I6_15	*	hetalt	97.1523	94.5503	99.9016	36.5262	8085	466	8123	8	8	100.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	85.2596	74.3610	99.9015	32.1524	931	321	1014	1	1	100.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9097	99.9179	99.9015	54.3245	6083	5	6083	6	4	66.6667
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7907	99.6802	99.9015	41.5683	4052	13	4057	4	3	75.0000
eyeh-varpipe	SNP	ti	map_l125_m2_e1	homalt	99.8678	99.8342	99.9015	70.5782	11439	19	11154	11	6	54.5455
hfeng-pmm1	SNP	tv	map_siren	homalt	99.8956	99.8898	99.9014	56.0205	17221	19	17219	17	8	47.0588
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7907	99.6802	99.9014	44.8913	4052	13	4052	4	1	25.0000
hfeng-pmm2	SNP	tv	map_siren	homalt	99.9014	99.9014	99.9014	56.1199	17223	17	17220	17	9	52.9412
ckim-dragen	SNP	tv	map_siren	homalt	99.7415	99.5824	99.9011	51.8437	17168	72	17170	17	15	88.2353
raldana-dualsentieon	INDEL	D6_15	HG002complexvar	hetalt	97.2668	94.7680	99.9010	47.1204	960	53	1009	1	1	100.0000
raldana-dualsentieon	SNP	tv	map_l125_m2_e1	homalt	99.7857	99.6707	99.9010	65.8803	6054	20	6054	6	3	50.0000
ltrigg-rtg2	INDEL	I1_5	HG002complexvar	homalt	99.5439	99.1894	99.9010	45.4107	13338	109	13119	13	8	61.5385
jli-custom	SNP	tv	map_l125_m2_e1	homalt	99.7361	99.5719	99.9009	65.9064	6048	26	6048	6	5	83.3333
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8811	99.8613	99.9009	61.7921	10083	14	10083	10	2	20.0000
hfeng-pmm2	INDEL	D1_5	HG002complexvar	*	99.1842	98.4778	99.9009	57.1533	32217	498	32268	32	21	65.6250
ndellapenna-hhga	SNP	ti	HG002complexvar	homalt	99.8705	99.8403	99.9007	18.4130	193154	309	193175	192	171	89.0625
eyeh-varpipe	SNP	ti	map_l125_m2_e0	homalt	99.8667	99.8327	99.9006	70.5235	11339	19	11058	11	6	54.5455
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	84.6788	73.4824	99.9005	31.7719	920	332	1004	1	1	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.6909	95.5769	99.9005	44.3501	2982	138	3011	3	3	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5502	99.2026	99.9003	37.1632	18038	145	18035	18	3	16.6667
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5585	99.2191	99.9003	37.7315	18041	142	18038	18	6	33.3333
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	homalt	99.7786	99.6572	99.9002	59.2105	9012	31	9012	9	6	66.6667
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	homalt	99.7370	99.5745	99.9001	63.0037	10998	47	10998	11	9	81.8182
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8378	99.7756	99.9001	47.7433	4002	9	4002	4	0	0.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8503	99.8005	99.9001	62.4759	7005	14	7001	7	3	42.8571
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8004	99.7008	99.9001	56.9199	6998	21	7003	7	4	57.1429
raldana-dualsentieon	SNP	tv	map_l125_m2_e0	homalt	99.7837	99.6676	99.9000	65.8746	5997	20	5997	6	3	50.0000
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.4894	95.1923	99.9000	43.6220	2970	150	2998	3	3	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7861	99.6723	99.9000	60.2486	6996	23	6996	7	5	71.4286
ltrigg-rtg1	SNP	*	map_l100_m1_e0	homalt	99.8221	99.7445	99.8999	60.0030	26934	69	26933	27	24	88.8889
jli-custom	SNP	tv	map_l125_m2_e0	homalt	99.7336	99.5679	99.8999	65.8835	5991	26	5991	6	5	83.3333
qzeng-custom	SNP	tv	*	homalt	99.5964	99.2947	99.8999	20.4155	374463	2660	372209	373	242	64.8794

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge