PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 293 294 295 296 297 298 299 300 301 ... 1720 1721 » 14801-14850 / 86044 show all
hfeng-pmm3	INDEL	I1_5	HG002complexvar	het	99.5309	99.1588	99.9057	57.5378	18036	153	18015	17	6	35.2941
hfeng-pmm3	SNP	ti	func_cds	*	99.9347	99.9637	99.9057	21.9632	13782	5	13780	13	0	0.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2973	98.6962	99.9057	48.2245	4239	56	4239	4	1	25.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5541	99.2049	99.9057	74.5256	2121	17	2119	2	1	50.0000
ndellapenna-hhga	SNP	*	map_l150_m2_e0	homalt	99.6916	99.4786	99.9056	72.3853	11638	61	11638	11	10	90.9091
raldana-dualsentieon	SNP	*	map_l150_m2_e0	homalt	99.7131	99.5213	99.9056	69.8863	11643	56	11643	11	8	72.7273
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6226	99.3415	99.9054	80.1278	1056	7	1056	1	1	100.0000
dgrover-gatk	SNP	ti	HG002compoundhet	homalt	99.9121	99.9189	99.9053	30.4654	7388	6	7388	7	7	100.0000
astatham-gatk	SNP	ti	HG002compoundhet	homalt	99.8918	99.8783	99.9053	30.4740	7385	9	7385	7	7	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	96.5644	93.4397	99.9052	38.7696	1054	74	1054	1	1	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.4748	95.1598	99.9052	33.6375	2084	106	2107	2	2	100.0000
ltrigg-rtg1	SNP	*	map_l125_m1_e0	homalt	99.7779	99.6510	99.9051	65.6341	16846	59	16847	16	16	100.0000
ckim-isaac	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	96.6931	93.6813	99.9050	54.1997	9459	638	9468	9	7	77.7778
raldana-dualsentieon	SNP	*	map_l100_m0_e0	homalt	99.7198	99.5353	99.9050	58.6521	11566	54	11566	11	8	72.7273
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.2379	87.4049	99.9050	31.0740	2068	298	2103	2	2	100.0000
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.1992	98.5033	99.9050	39.1794	2106	32	2103	2	1	50.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.0450	87.0668	99.9048	30.8983	2060	306	2098	2	2	100.0000
qzeng-custom	SNP	ti	*	homalt	99.6207	99.3383	99.9047	15.9860	797725	5314	792891	756	473	62.5661
qzeng-custom	SNP	ti	func_cds	homalt	99.8860	99.8673	99.9047	18.9998	5268	7	5243	5	3	60.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7194	99.5347	99.9047	51.7499	25241	118	25164	24	15	62.5000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7071	99.5105	99.9045	32.0412	7319	36	7321	7	2	28.5714
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7614	99.6188	99.9044	71.9607	3136	12	3136	3	3	100.0000
jlack-gatk	SNP	ti	map_l100_m1_e0	homalt	99.3843	98.8697	99.9044	57.5961	17757	203	17757	17	15	88.2353
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.8514	86.7287	99.9044	30.7514	2052	314	2090	2	2	100.0000
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8087	99.7134	99.9043	58.1701	28179	81	28181	27	15	55.5556
egarrison-hhga	SNP	ti	map_l150_m1_e0	homalt	99.7745	99.6451	99.9042	70.8007	7301	26	7301	7	7	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5582	99.2146	99.9041	50.2607	14654	116	14581	14	6	42.8571
qzeng-custom	SNP	*	*	homalt	99.6134	99.3243	99.9041	17.3884	1172188	7974	1162090	1115	707	63.4081
raldana-dualsentieon	SNP	ti	map_l150_m1_e0	homalt	99.6923	99.4814	99.9041	67.2252	7289	38	7289	7	6	85.7143
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.7288	99.9041	43.6419	6251	17	6252	6	5	83.3333
gduggal-bwavard	SNP	tv	map_siren	homalt	98.5863	97.3028	99.9041	54.3761	16775	465	16665	16	12	75.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	89.6250	81.2640	99.9038	61.4872	17796	4103	17660	17	16	94.1176
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	homalt	99.7377	99.5724	99.9037	65.6841	11409	49	11409	11	9	81.8182
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.6530	93.6073	99.9036	32.9997	2050	140	2073	2	2	100.0000
raldana-dualsentieon	SNP	*	*	het	99.8865	99.8694	99.9036	19.2179	1871141	2446	1871016	1806	43	2.3810
jli-custom	INDEL	D1_5	HG002complexvar	het	99.7322	99.5618	99.9033	54.7904	20674	91	20667	20	6	30.0000
astatham-gatk	SNP	ti	map_l125_m2_e1	homalt	99.4917	99.0836	99.9032	65.8143	11353	105	11353	11	10	90.9091
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	homalt	99.7847	99.6667	99.9030	61.6624	9271	31	9271	9	6	66.6667
raldana-dualsentieon	SNP	tv	map_l150_m2_e1	homalt	99.7335	99.5646	99.9029	70.1838	4116	18	4116	4	2	50.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8463	99.7898	99.9029	55.0600	6171	13	6171	6	1	16.6667
jli-custom	SNP	tv	map_l150_m2_e1	homalt	99.6848	99.4678	99.9028	70.2106	4112	22	4112	4	4	100.0000
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	homalt	99.7354	99.5686	99.9028	65.6605	11309	49	11309	11	9	81.8182
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.2126	92.7854	99.9028	33.4520	2032	158	2055	2	2	100.0000
jlack-gatk	SNP	ti	map_l125_m2_e1	homalt	99.2489	98.6036	99.9027	66.4043	11298	160	11298	11	9	81.8182
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9292	99.9557	99.9027	55.9852	11291	5	11292	11	11	100.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9381	99.9734	99.9027	56.1708	11293	3	11293	11	11	100.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9292	99.9026	55.9613	11288	8	11288	11	10	90.9091
astatham-gatk	SNP	ti	map_l125_m2_e0	homalt	99.4872	99.0755	99.9023	65.7910	11253	105	11253	11	10	90.9091
gduggal-bwaplat	SNP	ti	map_l150_m1_e0	homalt	59.0384	41.8998	99.9022	84.1026	3070	4257	3066	3	3	100.0000
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	homalt	99.7827	99.6636	99.9021	61.6697	9183	31	9183	9	6	66.6667

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge