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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
14751-14800 / 86044 show all
ltrigg-rtg1INDELI6_15HG002compoundhethetalt
95.0169
90.5822
99.9083
29.3644
7733804762876
85.7143
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8349
99.7617
99.9082
57.3447
108852610888106
60.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8854
99.8625
99.9082
58.4392
108961510886106
60.0000
ckim-dragenSNP*HG002complexvarhet
99.9146
99.9212
99.9081
19.1598
465130367465401428195
45.5607
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3604
98.8187
99.9081
42.3617
217526217522
100.0000
egarrison-hhgaSNPtimap_l150_m2_e0homalt
99.7831
99.6586
99.9079
73.1839
759026759077
100.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8619
99.8160
99.9079
64.2822
21704217021
50.0000
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
88.3910
79.2549
99.9079
40.8013
2170568217021
50.0000
ltrigg-rtg1SNP*map_l125_m2_e0homalt
99.7839
99.6604
99.9077
68.1589
1731659173171616
100.0000
raldana-dualsentieonSNPtimap_l150_m2_e0homalt
99.6974
99.4879
99.9077
69.7016
757739757776
85.7143
jli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7466
99.5860
99.9077
57.3042
28143117281462619
73.0769
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8432
99.7787
99.9077
76.2675
541112541153
60.0000
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8432
99.7787
99.9077
76.2675
541112541153
60.0000
gduggal-bwavardSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2222
98.5461
99.9076
38.9281
216932216322
100.0000
gduggal-snapplatSNP*map_l150_m1_e0homalt
92.6495
86.3745
99.9076
72.5432
97371536972899
100.0000
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.7414
97.6021
99.9075
50.0923
219854216120
0.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
83.8710
72.2706
99.9075
34.6038
1079414108011
100.0000
hfeng-pmm3INDELD1_5HG002complexvar*
99.2121
98.5267
99.9072
56.6840
32233482322853019
63.3333
hfeng-pmm3SNP*HG002compoundhethomalt
99.8980
99.8887
99.9072
34.7339
1077012107701010
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5930
99.2808
99.9072
72.4630
538439538455
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5930
99.2808
99.9072
72.4630
538439538455
100.0000
raldana-dualsentieonSNP*HG002compoundhet*
97.7792
95.7401
99.9071
39.6169
247221100247222315
65.2174
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1619
21502215022
100.0000
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1764
21502215022
100.0000
hfeng-pmm3SNPtvmap_sirenhomalt
99.8898
99.8724
99.9071
55.8869
172182217215168
50.0000
jlack-gatkSNPtimap_l100_m2_e1homalt
99.3913
98.8807
99.9071
60.0864
18287207182871715
88.2353
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
99.9535
99.9071
44.5246
21511215122
100.0000
jlack-gatkSNP*segduphomalt
99.8743
99.8418
99.9069
88.3916
1072617107261010
100.0000
jlack-gatkSNPtvHG002complexvar*
99.9000
99.8932
99.9069
22.4572
24588926324579522981
35.3712
jli-customSNP*segduphomalt
99.9023
99.8976
99.9069
88.0536
1073211107321010
100.0000
bgallagher-sentieonSNP*segduphomalt
99.8883
99.8697
99.9069
88.1168
1072914107291010
100.0000
astatham-gatkSNP*segduphomalt
99.8696
99.8324
99.9068
88.1147
1072518107251010
100.0000
hfeng-pmm3INDELD1_5HG002complexvarhet
98.9670
98.0448
99.9068
54.1875
20359406203631911
57.8947
eyeh-varpipeSNPtimap_l150_m2_e1homalt
99.8689
99.8310
99.9067
75.1753
768013749975
71.4286
raldana-dualsentieonSNP*map_l150_m2_e1homalt
99.7077
99.5096
99.9066
69.9014
117695811769118
72.7273
ndellapenna-hhgaSNP*map_l150_m2_e1homalt
99.6950
99.4842
99.9066
72.4121
1176661117661110
90.9091
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7905
99.6747
99.9066
41.3311
21457214021
50.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7439
99.5818
99.9065
40.0728
21439213821
50.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9064
99.9065
99.9064
76.8906
21362213421
50.0000
hfeng-pmm3SNP*func_cds*
99.9367
99.9669
99.9064
23.5356
18144618141170
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6122
99.3198
99.9063
37.9962
106597310659104
40.0000
jlack-gatkSNPtimap_l100_m2_e0homalt
99.3934
98.8858
99.9062
60.1223
18105204181051715
88.2353
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8361
99.7661
99.9062
74.5708
21335213121
50.0000
jli-customINDELI1_5HG002complexvarhet
99.6665
99.4282
99.9059
56.5291
1808510418053179
52.9412
astatham-gatkSNPtimap_siren*
94.0656
88.8705
99.9059
56.9785
8918611169891718446
54.7619
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8588
99.8119
99.9058
80.0075
10612106111
100.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6247
99.3452
99.9058
74.7803
212414212221
50.0000
eyeh-varpipeSNPtimap_l150_m2_e0homalt
99.8676
99.8293
99.9058
75.1080
760313742675
71.4286
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8588
99.8119
99.9058
81.3717
10612106111
100.0000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.8657
94.0053
99.9057
45.5875
2117135211921
50.0000