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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 291 292 293 294 295 296 297 298 299 ... 1720 1721 » 14701-14750 / 86044 show all
gduggal-bwaplat	SNP	ti	map_l150_m2_e1	homalt	60.6049	43.4941	99.9103	85.0982	3346	4347	3342	3	3	100.0000
egarrison-hhga	SNP	*	map_l125_m0_e0	homalt	99.7164	99.5232	99.9103	68.4370	6680	32	6680	6	6	100.0000
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2864	98.6702	99.9102	42.2199	1113	15	1113	1	1	100.0000
astatham-gatk	SNP	*	func_cds	het	99.7982	99.6864	99.9102	26.1346	11126	35	11123	10	0	0.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.5714	93.4487	99.9101	42.6066	3295	231	3335	3	3	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.5714	93.4487	99.9101	42.6066	3295	231	3335	3	3	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3889	98.8731	99.9101	37.5970	6668	76	6668	6	0	0.0000
gduggal-bwaplat	SNP	tv	HG002complexvar	homalt	97.7875	95.7534	99.9100	24.5806	91072	4039	90999	82	77	93.9024
gduggal-bwafb	SNP	ti	map_l125_m0_e0	homalt	99.3844	98.8644	99.9100	71.6564	4440	51	4440	4	3	75.0000
ckim-isaac	SNP	*	map_l150_m2_e1	homalt	63.8200	46.8842	99.9099	70.9059	5545	6282	5545	5	5	100.0000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2913	98.6803	99.9099	43.4022	6655	89	6655	6	1	16.6667
raldana-dualsentieon	SNP	ti	map_l100_m0_e0	homalt	99.7165	99.5241	99.9096	57.9975	7737	37	7737	7	6	85.7143
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2959	98.6897	99.9096	50.3888	6628	88	6630	6	3	50.0000
ltrigg-rtg1	INDEL	D6_15	HG002complexvar	homalt	99.0057	98.1180	99.9096	52.1005	1147	22	1105	1	0	0.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7742	99.6391	99.9096	52.3779	11044	40	11055	10	7	70.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7968	99.6842	99.9096	55.6842	11049	35	11049	10	7	70.0000
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8284	99.7474	99.9096	58.5102	11056	28	11052	10	4	40.0000
egarrison-hhga	SNP	tv	map_l125_m0_e0	homalt	99.6615	99.4147	99.9095	69.6595	2208	13	2208	2	2	100.0000
ckim-isaac	SNP	ti	map_l125_m0_e0	homalt	65.7804	49.0314	99.9093	59.9855	2202	2289	2202	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.9545	96.0747	99.9093	57.3738	5507	225	5507	5	4	80.0000
gduggal-snapplat	SNP	ti	map_l125_m1_e0	homalt	94.5380	89.7148	99.9092	66.4158	9909	1136	9898	9	9	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9319	99.9546	99.9092	41.9151	2200	1	2200	2	2	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9319	99.9546	99.9092	41.8384	2200	1	2200	2	2	100.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9319	99.9546	99.9092	41.9457	2200	1	2200	2	2	100.0000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8864	99.8637	99.9091	41.9065	2198	3	2198	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	segdup	*	99.6820	99.4560	99.9091	93.9277	1097	6	1099	1	0	0.0000
dgrover-gatk	SNP	ti	map_l125_m1_e0	homalt	99.6414	99.3753	99.9090	63.5537	10976	69	10976	10	8	80.0000
gduggal-bwaplat	SNP	ti	map_l150_m2_e0	homalt	60.4067	43.2904	99.9090	85.1344	3297	4319	3293	3	3	100.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7726	99.6365	99.9090	41.7859	2193	8	2195	2	1	50.0000
gduggal-snapplat	SNP	*	*	homalt	99.3703	98.8374	99.9089	19.1469	1166442	13720	1166214	1063	359	33.7723
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7953	99.6820	99.9089	42.1191	2194	7	2194	2	2	100.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7953	99.6820	99.9089	42.1496	2194	7	2194	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.6815	95.5513	99.9088	57.5685	5477	255	5478	5	3	60.0000
asubramanian-gatk	SNP	tv	HG002compoundhet	homalt	98.5034	97.1370	99.9088	42.9389	3291	97	3286	3	2	66.6667
egarrison-hhga	SNP	ti	map_l150_m2_e1	homalt	99.7853	99.6620	99.9088	73.2343	7667	26	7667	7	7	100.0000
gduggal-bwavard	INDEL	D1_5	*	homalt	95.1427	90.8106	99.9088	44.5205	44430	4496	43826	40	27	67.5000
gduggal-bwavard	SNP	*	map_siren	homalt	98.4056	96.9468	99.9088	52.1457	53472	1684	52608	48	40	83.3333
gduggal-snapplat	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	91.6132	84.5897	99.9088	64.9616	3288	599	3285	3	0	0.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8660	99.8235	99.9086	58.4519	16400	29	16399	15	4	26.6667
raldana-dualsentieon	SNP	ti	map_l150_m2_e1	homalt	99.6939	99.4800	99.9086	69.7472	7653	40	7653	7	6	85.7143
ltrigg-rtg1	SNP	*	map_l125_m2_e1	homalt	99.7859	99.6635	99.9086	68.1960	17473	59	17480	16	16	100.0000
egarrison-hhga	SNP	tv	func_cds	*	99.9543	100.0000	99.9086	28.4546	4371	0	4371	4	0	0.0000
hfeng-pmm3	SNP	tv	func_cds	*	99.9428	99.9771	99.9085	28.1938	4370	1	4369	4	0	0.0000
hfeng-pmm1	SNP	tv	func_cds	*	99.9314	99.9542	99.9085	27.9499	4369	2	4368	4	0	0.0000
rpoplin-dv42	SNP	tv	func_cds	*	99.9199	99.9314	99.9085	29.6249	4368	3	4367	4	1	25.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9175	99.9267	99.9084	60.9850	10903	8	10906	10	2	20.0000
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	het	99.8096	99.7111	99.9084	56.0707	20705	60	20713	19	12	63.1579
jlack-gatk	INDEL	I6_15	*	hetalt	94.0319	88.8083	99.9084	39.1561	7594	957	7635	7	6	85.7143
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1881	98.4782	99.9083	59.9451	34880	539	34871	32	8	25.0000
astatham-gatk	SNP	tv	func_cds	*	99.8283	99.7483	99.9083	29.1951	4360	11	4359	4	0	0.0000

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