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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 288 289 290 291 292 293 294 295 296 ... 1720 1721 » 14551-14600 / 86044 show all
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	homalt	99.6785	99.4404	99.9177	69.6369	7286	41	7286	6	6	100.0000
ckim-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.4324	1214	10	1214	1	1	100.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9260	99.9343	99.9177	51.2440	6084	4	6070	5	2	40.0000
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.2008	1214	10	1214	1	1	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	98.9695	98.0392	99.9176	57.2234	1200	24	1213	1	1	100.0000
egarrison-hhga	SNP	tv	map_l125_m2_e1	homalt	99.7940	99.6707	99.9175	69.5482	6054	20	6054	5	5	100.0000
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3840	98.8562	99.9174	59.5119	1210	14	1210	1	1	100.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8303	99.7434	99.9174	59.7828	10883	28	10881	9	5	55.5556
gduggal-snapplat	SNP	tv	map_l100_m2_e1	homalt	95.2868	91.0664	99.9174	66.1273	8471	831	8471	7	2	28.5714
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5680	99.2210	99.9174	48.2147	2420	19	2420	2	0	0.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7936	99.6701	99.9173	72.0908	16919	56	16921	14	4	28.5714
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7843	99.6517	99.9173	61.4911	10873	38	10869	9	5	55.5556
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8448	99.7726	99.9172	69.6417	4826	11	4826	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8552	99.7933	99.9172	69.3872	4827	10	4827	4	3	75.0000
raldana-dualsentieon	SNP	ti	HG002compoundhet	*	98.2432	96.6243	99.9172	34.4311	16888	590	16889	14	10	71.4286
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.5440	84.4657	99.9171	36.7662	2300	423	2411	2	2	100.0000
ckim-gatk	SNP	ti	map_l125_m0_e0	homalt	69.8436	53.6851	99.9171	79.2054	2411	2080	2411	2	1	50.0000
asubramanian-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.1770	98.4477	99.9171	58.7551	1205	19	1205	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8817	99.8462	99.9171	55.0271	25320	39	25323	21	16	76.1905
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8718	99.8265	99.9171	55.1617	25315	44	25318	21	16	76.1905
ndellapenna-hhga	SNP	*	map_l100_m2_e1	homalt	99.7857	99.6546	99.9170	62.4746	27700	96	27700	23	21	91.3043
bgallagher-sentieon	SNP	*	map_l100_m2_e1	homalt	99.7911	99.6654	99.9170	60.2187	27703	93	27703	23	18	78.2609
hfeng-pmm1	SNP	tv	HG002compoundhet	*	97.0546	94.3517	99.9169	46.7711	8419	504	8417	7	7	100.0000
ndellapenna-hhga	SNP	*	map_l125_m1_e0	homalt	99.7333	99.5504	99.9169	65.2026	16829	76	16829	14	13	92.8571
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6890	99.4621	99.9169	79.7698	2404	13	2406	2	1	50.0000
jli-custom	SNP	*	map_l125_m1_e0	homalt	99.7452	99.5741	99.9169	62.6179	16833	72	16833	14	13	92.8571
hfeng-pmm2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3761	98.8412	99.9168	52.9178	27635	324	27634	23	3	13.0435
egarrison-hhga	SNP	tv	map_l125_m2_e0	homalt	99.7920	99.6676	99.9167	69.5036	5997	20	5997	5	5	100.0000
gduggal-snapplat	SNP	tv	map_l100_m2_e0	homalt	95.2754	91.0462	99.9166	66.1343	8389	825	8390	7	2	28.5714
hfeng-pmm1	INDEL	D1_5	HG002complexvar	het	98.9178	97.9388	99.9165	54.1519	20337	428	20340	17	9	52.9412
raldana-dualsentieon	SNP	*	HG002compoundhet	homalt	99.8887	99.8609	99.9165	34.8192	10767	15	10768	9	8	88.8889
raldana-dualsentieon	SNP	*	segdup	homalt	99.9022	99.8883	99.9162	87.9114	10731	12	10731	9	9	100.0000
ndellapenna-hhga	SNP	*	map_l100_m2_e0	homalt	99.7835	99.6512	99.9162	62.4810	27427	96	27427	23	21	91.3043
bgallagher-sentieon	SNP	*	map_l100_m2_e0	homalt	99.7908	99.6657	99.9162	60.2352	27431	92	27431	23	18	78.2609
dgrover-gatk	SNP	*	segdup	homalt	99.8976	99.8790	99.9162	88.2042	10730	13	10730	9	9	100.0000
ckim-gatk	SNP	*	map_l125_m0_e0	homalt	69.4469	53.2181	99.9161	80.0469	3572	3140	3572	3	1	33.3333
jli-custom	SNP	*	*	*	99.9382	99.9603	99.9160	18.2994	3053407	1212	3053302	2566	212	8.2619
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8435	99.7712	99.9160	32.7499	1308	3	1190	1	1	100.0000
eyeh-varpipe	SNP	ti	map_siren	homalt	99.8945	99.8734	99.9157	53.2558	37868	48	36723	31	17	54.8387
ltrigg-rtg2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1689	98.4332	99.9157	48.1800	3581	57	3556	3	2	66.6667
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6074	99.3012	99.9156	37.6986	10657	75	10657	9	0	0.0000
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.0887	98.2753	99.9156	51.4864	5983	105	5919	5	4	80.0000
ckim-gatk	SNP	*	segdup	homalt	99.4811	99.0505	99.9155	88.5459	10641	102	10641	9	9	100.0000
ckim-isaac	SNP	ti	map_l150_m1_e0	homalt	65.1458	48.3281	99.9153	66.1412	3541	3786	3541	3	3	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	homalt	99.7799	99.6449	99.9152	73.3597	11785	42	11785	10	10	100.0000
jli-custom	SNP	*	map_l150_m2_e1	homalt	99.7034	99.4927	99.9151	70.0155	11767	60	11767	10	10	100.0000
hfeng-pmm3	INDEL	D1_5	HG002complexvar	homalt	99.8962	99.8773	99.9151	58.2388	10585	13	10590	9	8	88.8889
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4714	99.0316	99.9151	48.2190	11760	115	11765	10	7	70.0000
hfeng-pmm1	INDEL	D1_5	HG002complexvar	homalt	99.8679	99.8207	99.9150	58.2795	10579	19	10583	9	8	88.8889

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