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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 287 288 289 290 291 292 293 294 295 ... 1720 1721 » 14501-14550 / 86044 show all
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9202	99.9202	99.9202	44.4375	6263	5	6263	5	3	60.0000
ndellapenna-hhga	SNP	ti	func_cds	*	99.9384	99.9565	99.9202	22.0527	13781	6	13781	11	0	0.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8403	99.7607	99.9201	44.0150	6253	15	6253	5	3	60.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8403	99.7607	99.9201	44.1798	6253	15	6253	5	2	40.0000
ltrigg-rtg2	INDEL	I1_5	*	homalt	99.7495	99.5797	99.9200	48.8836	60173	254	59955	48	38	79.1667
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7923	99.6650	99.9200	46.9810	6247	21	6247	5	3	60.0000
ndellapenna-hhga	SNP	*	map_l125_m2_e1	homalt	99.7429	99.5665	99.9199	68.0072	17456	76	17456	14	13	92.8571
gduggal-bwafb	SNP	*	map_siren	homalt	99.7102	99.5014	99.9199	54.2074	54881	275	54881	44	25	56.8182
jli-custom	SNP	*	map_l125_m2_e1	homalt	99.7486	99.5779	99.9199	65.4177	17458	74	17458	14	13	92.8571
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	93.1937	87.3160	99.9198	34.2646	1246	181	1246	1	0	0.0000
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1579	98.4076	99.9197	59.2367	34855	564	34845	28	5	17.8571
gduggal-snapplat	SNP	tv	map_siren	homalt	96.8214	93.9095	99.9197	58.2133	16190	1050	16181	13	5	38.4615
ckim-isaac	SNP	ti	map_l150_m2_e0	homalt	65.7563	49.0021	99.9197	70.0457	3732	3884	3732	3	3	100.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8991	99.8789	99.9192	29.1154	2475	3	2474	2	1	50.0000
ltrigg-rtg2	SNP	tv	map_l250_m1_e0	*	96.5840	93.4643	99.9191	77.8524	2474	173	2471	2	0	0.0000
ndellapenna-hhga	SNP	*	map_l125_m2_e0	homalt	99.7405	99.5626	99.9191	67.9668	17299	76	17299	14	13	92.8571
jli-custom	SNP	*	map_l125_m2_e0	homalt	99.7463	99.5741	99.9191	65.3928	17301	74	17301	14	13	92.8571
hfeng-pmm1	SNP	ti	HG002compoundhet	homalt	99.9392	99.9594	99.9189	30.5967	7391	3	7391	6	6	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7169	99.5157	99.9189	27.4838	2466	12	2465	2	0	0.0000
hfeng-pmm2	SNP	ti	HG002compoundhet	homalt	99.9324	99.9459	99.9189	30.7750	7390	4	7390	6	6	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6764	99.4350	99.9189	28.6252	2464	14	2464	2	0	0.0000
raldana-dualsentieon	SNP	ti	HG002compoundhet	homalt	99.9189	99.9189	99.9189	30.4421	7388	6	7388	6	6	100.0000
jlack-gatk	SNP	ti	HG002compoundhet	homalt	99.8918	99.8648	99.9188	30.3225	7384	10	7384	6	6	100.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9052	99.8917	99.9188	56.2157	11072	12	11068	9	4	44.4444
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6839	99.4502	99.9188	54.8820	6150	34	6150	5	0	0.0000
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	homalt	99.7970	99.6756	99.9187	61.7788	18434	60	18434	15	15	100.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8239	99.7293	99.9186	58.6595	11054	30	11050	9	2	22.2222
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.5138	99.1122	99.9186	36.8380	2456	22	2455	2	1	50.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5537	99.1915	99.9186	53.5276	6134	50	6134	5	0	0.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7605	99.6030	99.9185	55.4188	11040	44	11040	9	6	66.6667
hfeng-pmm1	SNP	*	map_siren	homalt	99.8994	99.8803	99.9184	53.4037	55090	66	55084	45	26	57.7778
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8311	99.7438	99.9184	52.5299	17133	44	17145	14	9	64.2857
raldana-dualsentieon	SNP	ti	map_l125_m1_e0	homalt	99.7597	99.6016	99.9183	62.2389	11001	44	11001	9	8	88.8889
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7872	99.6565	99.9183	57.2121	17118	59	17114	14	8	57.1429
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.6735	97.4593	99.9183	53.0977	11009	287	11006	9	4	44.4444
mlin-fermikit	SNP	ti	*	het	98.8419	97.7886	99.9182	14.5462	1253549	28348	1253519	1026	32	3.1189
ckim-gatk	SNP	ti	HG002compoundhet	homalt	99.4702	99.0262	99.9181	30.6914	7322	72	7322	6	6	100.0000
hfeng-pmm2	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.5098	99.9180	66.6027	1218	6	1218	1	0	0.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6524	99.3882	99.9179	31.7465	7310	45	7306	6	1	16.6667
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9507	99.9179	54.3410	6085	3	6085	5	5	100.0000
jlack-gatk	SNP	*	map_siren	homalt	99.6008	99.2857	99.9179	50.5286	54762	394	54753	45	30	66.6667
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6723	99.9179	61.7916	18249	60	18249	15	15	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0944	98.2843	99.9179	60.1440	1203	21	1217	1	1	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3977	98.8829	99.9179	55.5579	14605	165	14609	12	3	25.0000
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5902	99.2647	99.9178	64.5481	1215	9	1215	1	0	0.0000
jli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6313	99.3464	99.9178	60.7293	1216	8	1216	1	1	100.0000
jli-custom	SNP	ti	map_l150_m1_e0	homalt	99.7128	99.5087	99.9178	67.3088	7291	36	7291	6	6	100.0000
ltrigg-rtg2	SNP	ti	map_l150_m1_e0	homalt	99.6922	99.4677	99.9178	67.8010	7288	39	7289	6	6	100.0000
ltrigg-rtg2	SNP	ti	HG002compoundhet	homalt	99.4222	98.9316	99.9177	28.6749	7315	79	7282	6	5	83.3333
astatham-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5490	99.1830	99.9177	59.0909	1214	10	1214	1	1	100.0000

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