PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1401-1450 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9938 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | tv | func_cds | homalt | 99.8531 | 99.7066 | 100.0000 | 25.3758 | 1699 | 5 | 1688 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0120 | 15 | 0 | 15 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.9499 | 786 | 0 | 778 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 71.9914 | 525 | 0 | 519 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0120 | 15 | 0 | 15 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.1220 | 8 | 1 | 8 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 99.0099 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.8095 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 96.6942 | 4 | 5 | 4 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 98.3740 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 98.3871 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9228 | 7 | 0 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9200 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9259 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8020 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9232 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3380 | 226 | 0 | 226 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 99.2450 | 11 | 1 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1316 | 82.0359 | 100.0000 | 68.2540 | 137 | 30 | 140 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2816 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7143 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.6741 | 93.5622 | 100.0000 | 75.4425 | 218 | 15 | 222 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.6744 | 95.4545 | 100.0000 | 78.8079 | 126 | 6 | 128 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.4615 | 1 | 1 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.8264 | 70.6869 | 100.0000 | 30.6648 | 885 | 367 | 970 | 0 | 0 | ||