PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 285 286 287 288 289 290 291 292 293 ... 1720 1721 » 14401-14450 / 86044 show all
gduggal-bwavard	SNP	tv	HG002complexvar	homalt	98.3914	96.9047	99.9244	20.9085	92167	2944	89912	68	35	51.4706
ckim-gatk	INDEL	I6_15	*	hetalt	95.9700	92.3167	99.9244	35.7056	7894	657	7935	6	5	83.3333
ckim-vqsr	INDEL	I6_15	*	hetalt	95.9384	92.2582	99.9244	35.7201	7889	662	7930	6	5	83.3333
gduggal-snapplat	SNP	ti	map_l100_m2_e1	homalt	96.2554	92.8463	99.9243	62.6415	17171	1323	17154	13	13	100.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9156	99.9069	99.9243	55.5895	17161	16	17157	13	8	61.5385
astatham-gatk	SNP	tv	map_siren	homalt	99.7239	99.5244	99.9243	52.7924	17158	82	17155	13	10	76.9231
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2844	98.6527	99.9242	48.8561	1318	18	1318	1	0	0.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8485	99.7730	99.9242	55.1449	17138	39	17136	13	8	61.5385
egarrison-hhga	SNP	tv	map_l150_m0_e0	homalt	99.6224	99.3223	99.9242	75.6143	1319	9	1319	1	1	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2844	98.6527	99.9242	46.2291	1318	18	1318	1	0	0.0000
ltrigg-rtg2	SNP	tv	map_l150_m0_e0	homalt	99.6224	99.3223	99.9242	72.7891	1319	9	1319	1	0	0.0000
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	homalt	99.7943	99.6648	99.9241	59.4504	18432	62	18432	14	12	85.7143
dgrover-gatk	SNP	*	map_l100_m2_e1	homalt	99.7116	99.4999	99.9241	60.6444	27657	139	27657	21	16	76.1905
ckim-vqsr	SNP	*	HG002compoundhet	homalt	98.6617	97.4309	99.9239	35.4419	10505	277	10504	8	7	87.5000
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.5181	97.1512	99.9239	28.2478	2660	78	2627	2	1	50.0000
gduggal-bwaplat	SNP	*	segdup	homalt	98.8522	97.8032	99.9239	88.9336	10507	236	10502	8	8	100.0000
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	homalt	99.8534	99.7829	99.9239	63.3991	9194	20	9193	7	4	57.1429
astatham-gatk	SNP	ti	map_l100_m2_e1	homalt	99.6312	99.3403	99.9239	59.5512	18372	122	18372	14	13	92.8571
ckim-isaac	SNP	tv	func_cds	het	99.3184	98.7204	99.9238	24.8927	2623	34	2623	2	0	0.0000
egarrison-hhga	SNP	tv	map_l150_m1_e0	homalt	99.7589	99.5945	99.9237	71.1191	3930	16	3930	3	3	100.0000
rpoplin-dv42	INDEL	I1_5	HG002compoundhet	hetalt	96.6553	93.5940	99.9237	57.4617	10461	716	10476	8	8	100.0000
gduggal-snapvard	SNP	tv	*	homalt	99.4119	98.9054	99.9237	19.2463	372995	4128	370593	283	154	54.4170
gduggal-snapplat	SNP	*	map_l100_m1_e0	homalt	95.8529	92.1009	99.9236	61.4019	24870	2133	24854	19	14	73.6842
ckim-dragen	SNP	*	map_siren	homalt	99.7220	99.5214	99.9236	48.9049	54892	264	54896	42	38	90.4762
ckim-vqsr	SNP	*	segdup	homalt	98.5850	97.2820	99.9235	88.7282	10451	292	10451	8	8	100.0000
gduggal-snapplat	SNP	ti	map_l100_m2_e0	homalt	96.2308	92.8014	99.9235	62.6446	16991	1318	16974	13	13	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.7748	97.6522	99.9235	77.0526	1331	32	1307	1	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4756	99.0317	99.9234	63.0172	27410	268	27401	21	8	38.0952
dgrover-gatk	SNP	*	map_l100_m2_e0	homalt	99.7105	99.4986	99.9234	60.6643	27385	138	27385	21	16	76.1905
ckim-isaac	SNP	*	map_l150_m1_e0	homalt	63.2096	46.2255	99.9233	66.9874	5211	6062	5211	4	4	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.7712	99.9233	30.6546	1308	3	1302	1	1	100.0000
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6668	99.9233	59.4718	18248	61	18248	14	12	85.7143
gduggal-bwaplat	INDEL	D16_PLUS	HG002compoundhet	hetalt	80.5942	67.5311	99.9233	34.2251	1302	626	1302	1	1	100.0000
hfeng-pmm1	SNP	*	HG002compoundhet	*	97.8294	95.8214	99.9233	39.2517	24743	1079	24742	19	15	78.9474
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.7712	99.9233	31.1675	1308	3	1302	1	1	100.0000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7826	99.6424	99.9232	75.5082	3901	14	3901	3	2	66.6667
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7185	99.5147	99.9231	80.8305	3896	19	3898	3	1	33.3333
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8976	99.8720	99.9231	28.9976	3901	5	3900	3	2	66.6667
astatham-gatk	SNP	ti	map_l100_m2_e0	homalt	99.6302	99.3391	99.9231	59.5727	18188	121	18188	14	13	92.8571
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7564	99.5904	99.9230	28.4060	3890	16	3891	3	0	0.0000
ltrigg-rtg1	SNP	tv	HG002complexvar	het	99.7971	99.6716	99.9230	21.1569	150239	495	150457	116	36	31.0345
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7949	99.6672	99.9230	28.5321	3893	13	3892	3	1	33.3333
raldana-dualsentieon	SNP	ti	*	het	99.9019	99.8809	99.9229	17.7757	1280364	1527	1280313	988	21	2.1255
ckim-vqsr	SNP	ti	*	het	99.5238	99.1280	99.9229	24.8520	1270713	11178	1270665	981	62	6.3201
egarrison-hhga	SNP	*	func_cds	*	99.9477	99.9725	99.9229	23.9159	18145	5	18145	14	0	0.0000
egarrison-hhga	SNP	*	map_l125_m1_e0	homalt	99.8075	99.6924	99.9229	66.3441	16853	52	16853	13	13	100.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9228	99.9228	99.9228	59.2856	3884	3	3884	3	2	66.6667
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.5154	97.1471	99.9228	63.2207	1294	38	1294	1	0	0.0000
ltrigg-rtg1	SNP	tv	map_l100_m1_e0	homalt	99.8561	99.7899	99.9225	60.9412	9024	19	9023	7	4	57.1429
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8581	99.7937	99.9225	58.9725	3870	8	3870	3	1	33.3333

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge