PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14351-14400 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7805 | 99.6348 | 99.9267 | 31.1475 | 2728 | 10 | 2728 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7775 | 99.6287 | 99.9267 | 58.5881 | 16368 | 61 | 16366 | 12 | 1 | 8.3333 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7622 | 99.5982 | 99.9267 | 30.6657 | 2727 | 11 | 2727 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7592 | 99.5922 | 99.9267 | 60.1242 | 16362 | 67 | 16361 | 12 | 1 | 8.3333 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9129 | 99.8992 | 99.9266 | 60.1913 | 10900 | 11 | 10896 | 8 | 5 | 62.5000 | |
| jmaeng-gatk | SNP | ti | map_l150_m0_e0 | homalt | 66.0199 | 49.2937 | 99.9266 | 83.9216 | 1361 | 1400 | 1361 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | hetalt | 99.9052 | 99.8840 | 99.9265 | 25.0046 | 861 | 1 | 4079 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8773 | 99.8283 | 99.9264 | 43.4517 | 4070 | 7 | 4073 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8650 | 99.8038 | 99.9264 | 43.6688 | 4069 | 8 | 4072 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8773 | 99.8283 | 99.9264 | 44.0264 | 4070 | 7 | 4073 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | homalt | 99.7670 | 99.6081 | 99.9263 | 73.5886 | 4067 | 16 | 4067 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | ti | map_l150_m0_e0 | homalt | 65.8246 | 49.0764 | 99.9263 | 84.8914 | 1355 | 1406 | 1355 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | HG002complexvar | * | 99.8096 | 99.6932 | 99.9263 | 17.3694 | 506876 | 1560 | 505502 | 373 | 274 | 73.4584 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9139 | 99.9016 | 99.9262 | 45.6684 | 4061 | 4 | 4061 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | * | 99.7569 | 99.5881 | 99.9262 | 21.8704 | 245138 | 1014 | 245164 | 181 | 131 | 72.3757 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9262 | 99.9262 | 99.9262 | 45.5021 | 4062 | 3 | 4062 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6927 | 99.4604 | 99.9261 | 41.2641 | 4055 | 22 | 4058 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6680 | 99.4113 | 99.9261 | 41.1569 | 4053 | 24 | 4056 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6557 | 99.3868 | 99.9261 | 40.5247 | 4052 | 25 | 4055 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | map_siren | homalt | 99.9011 | 99.8760 | 99.9261 | 52.1075 | 37869 | 47 | 37865 | 28 | 18 | 64.2857 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9261 | 99.9261 | 99.9261 | 72.6113 | 1352 | 1 | 1352 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6310 | 99.3377 | 99.9260 | 40.6323 | 4050 | 27 | 4053 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3827 | 98.8452 | 99.9260 | 60.8128 | 10785 | 126 | 10801 | 8 | 5 | 62.5000 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | * | 99.8482 | 99.7705 | 99.9260 | 21.7021 | 245590 | 565 | 245834 | 182 | 72 | 39.5604 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7289 | 99.5326 | 99.9260 | 41.7636 | 4046 | 19 | 4052 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7906 | 99.6556 | 99.9260 | 49.2362 | 4051 | 14 | 4051 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8153 | 99.7048 | 99.9260 | 44.7261 | 4053 | 12 | 4053 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7906 | 99.6556 | 99.9260 | 45.0901 | 4051 | 14 | 4051 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | homalt | 62.9734 | 45.9727 | 99.9258 | 63.6902 | 2694 | 3166 | 2694 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.6208 | 99.3177 | 99.9258 | 72.3505 | 5386 | 37 | 5386 | 4 | 4 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.6208 | 99.3177 | 99.9258 | 72.3505 | 5386 | 37 | 5386 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l125_m2_e1 | homalt | 99.8144 | 99.7034 | 99.9257 | 69.0000 | 17480 | 52 | 17480 | 13 | 13 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.4982 | 97.1110 | 99.9257 | 65.7528 | 9412 | 280 | 9412 | 7 | 6 | 85.7143 | |
| hfeng-pmm3 | SNP | * | segdup | homalt | 99.9395 | 99.9535 | 99.9256 | 88.8624 | 10738 | 5 | 10738 | 8 | 8 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2106 | 96.5536 | 99.9255 | 53.9316 | 10702 | 382 | 10737 | 8 | 3 | 37.5000 | |
| ckim-dragen | SNP | * | segdup | homalt | 99.9022 | 99.8790 | 99.9255 | 87.7402 | 10730 | 13 | 10730 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | homalt | 98.2316 | 96.5943 | 99.9253 | 21.0137 | 278746 | 9828 | 278424 | 208 | 186 | 89.4231 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | homalt | 49.2722 | 32.6975 | 99.9253 | 90.1218 | 1337 | 2752 | 1337 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | homalt | 99.6639 | 99.4041 | 99.9251 | 65.7800 | 6672 | 40 | 6672 | 5 | 4 | 80.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1639 | 98.4142 | 99.9251 | 72.5328 | 5337 | 86 | 5337 | 4 | 4 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1639 | 98.4142 | 99.9251 | 72.5328 | 5337 | 86 | 5337 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | homalt | 99.8127 | 99.7007 | 99.9250 | 68.9614 | 17323 | 52 | 17323 | 13 | 13 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | hetalt | 97.5400 | 95.2663 | 99.9249 | 72.3364 | 1288 | 64 | 1331 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9248 | 99.9248 | 99.9248 | 37.2719 | 3984 | 3 | 3984 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | homalt | 99.8548 | 99.7850 | 99.9246 | 63.4100 | 9282 | 20 | 9281 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | homalt | 99.6981 | 99.4729 | 99.9244 | 76.2016 | 1321 | 7 | 1321 | 1 | 1 | 100.0000 | |