PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 283 284 285 286 287 288 289 290 291 ... 1720 1721 » 14301-14350 / 86044 show all
egarrison-hhga	SNP	ti	map_l100_m2_e0	homalt	99.8579	99.7870	99.9289	62.7872	18270	39	18270	13	13	100.0000
ltrigg-rtg2	SNP	*	map_l150_m1_e0	homalt	99.7245	99.5210	99.9288	67.8086	11219	54	11221	8	7	87.5000
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	homalt	99.8031	99.6778	99.9288	59.8461	18250	59	18249	13	13	100.0000
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	homalt	99.8196	99.7105	99.9288	58.8267	18256	53	18256	13	12	92.3077
mlin-fermikit	SNP	ti	func_cds	het	99.4565	98.9887	99.9288	17.2332	8418	86	8418	6	0	0.0000
dgrover-gatk	SNP	ti	map_l100_m2_e0	homalt	99.7264	99.5248	99.9287	59.9046	18222	87	18222	13	11	84.6154
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
ltrigg-rtg1	SNP	ti	map_siren	homalt	99.8522	99.7758	99.9287	51.0640	37831	85	37826	27	26	96.2963
ndellapenna-hhga	SNP	tv	*	het	99.8309	99.7335	99.9285	20.7977	590119	1577	590138	422	45	10.6635
ckim-isaac	SNP	tv	map_l125_m2_e0	homalt	63.4373	46.4683	99.9285	67.7501	2796	3221	2796	2	2	100.0000
rpoplin-dv42	SNP	*	func_cds	*	99.9366	99.9449	99.9284	24.7263	18140	10	18137	13	3	23.0769
gduggal-snapfb	SNP	*	func_cds	homalt	99.9570	99.9857	99.9284	24.3691	6978	1	6978	5	1	20.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6571	99.3874	99.9283	62.5798	6976	43	6972	5	3	60.0000
dgrover-gatk	SNP	*	*	*	99.9456	99.9631	99.9282	19.2565	3053492	1127	3053343	2195	207	9.4305
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0051	98.0989	99.9282	41.2255	5573	108	5569	4	4	100.0000
ckim-isaac	SNP	ti	map_l100_m0_e0	homalt	69.6665	53.4731	99.9279	52.0793	4157	3617	4157	3	3	100.0000
ckim-gatk	SNP	ti	map_l125_m1_e0	homalt	77.0788	62.7343	99.9279	73.7914	6929	4116	6929	5	4	80.0000
gduggal-snapplat	SNP	ti	map_l100_m1_e0	homalt	96.1786	92.7004	99.9279	60.1160	16649	1311	16632	12	12	100.0000
qzeng-custom	SNP	*	func_cds	homalt	99.8779	99.8281	99.9278	20.5349	6967	12	6918	5	3	60.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.9804	94.2019	99.9277	38.3793	1381	85	1383	1	1	100.0000
egarrison-hhga	SNP	ti	func_cds	*	99.9456	99.9637	99.9275	22.3817	13782	5	13782	10	0	0.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.3783	2756	2	2756	2	2	100.0000
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	homalt	99.8161	99.7049	99.9275	56.2318	17907	53	17907	13	12	92.3077
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9456	99.9637	99.9275	37.1096	2757	1	2757	2	2	100.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.0093	2756	2	2756	2	2	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	37.0751	2756	2	2756	2	2	100.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9638	100.0000	99.9275	37.9915	2758	0	2758	2	2	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.2312	2756	2	2756	2	2	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6659	99.9274	59.1233	17900	60	17900	13	13	100.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8912	99.8550	99.9274	36.4538	2754	4	2754	2	2	100.0000
egarrison-hhga	SNP	ti	map_l125_m1_e0	homalt	99.8187	99.7103	99.9274	66.0474	11013	32	11013	8	8	100.0000
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4564	98.9898	99.9274	58.6346	55069	562	55060	40	15	37.5000
hfeng-pmm3	SNP	*	map_siren	homalt	99.9057	99.8840	99.9274	53.2388	55092	64	55083	40	22	55.0000
ckim-gatk	SNP	ti	map_l150_m1_e0	homalt	72.0545	56.3396	99.9274	79.8232	4128	3199	4128	3	2	66.6667
jli-custom	SNP	ti	map_l125_m1_e0	homalt	99.7551	99.5835	99.9273	62.3216	10999	46	10999	8	8	100.0000
dgrover-gatk	SNP	ti	map_l100_m1_e0	homalt	99.7294	99.5323	99.9273	57.4153	17876	84	17876	13	11	84.6154
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.0365	96.2158	99.9273	21.3265	1373	54	1375	1	0	0.0000
egarrison-hhga	SNP	tv	map_l150_m2_e1	homalt	99.7698	99.6130	99.9272	73.5901	4118	16	4118	3	3	100.0000
bgallagher-sentieon	SNP	ti	*	*	99.9476	99.9680	99.9272	17.4519	2084844	667	2084781	1519	117	7.7024
ckim-isaac	SNP	*	map_l150_m2_e0	homalt	63.7998	46.8587	99.9271	70.9027	5482	6217	5482	4	4	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7814	99.6361	99.9271	72.2301	1369	5	1370	1	0	0.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7083	99.4905	99.9270	74.1698	1367	7	1368	1	0	0.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9635	99.9270	31.7808	2737	1	2737	2	1	50.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9635	99.9270	33.2602	2737	1	2737	2	1	50.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9087	99.8904	99.9269	30.4624	2735	3	2735	2	2	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8263	99.7261	99.9268	57.6141	16384	45	16382	12	5	41.6667
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2012	98.4859	99.9268	62.0594	1366	21	1366	1	0	0.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8903	99.8539	99.9268	27.7249	2734	4	2730	2	2	100.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8903	99.8539	99.9268	27.2049	2734	4	2730	2	2	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge