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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 282 283 284 285 286 287 288 289 290 ... 1720 1721 » 14251-14300 / 86044 show all
ltrigg-rtg2	SNP	*	map_l150_m2_e0	homalt	99.7345	99.5384	99.9314	70.4233	11645	54	11647	8	7	87.5000
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4357	98.9449	99.9314	53.1567	27664	295	27664	19	7	36.8421
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6580	99.3861	99.9314	49.5848	1457	9	1456	1	0	0.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9509	99.9705	99.9313	54.2320	10175	3	10175	7	7	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8131	99.6954	99.9311	54.3062	10147	31	10148	7	7	100.0000
egarrison-hhga	SNP	*	map_l100_m2_e0	homalt	99.8491	99.7675	99.9309	63.4300	27459	64	27459	19	18	94.7368
ltrigg-rtg2	SNP	*	map_l100_m0_e0	homalt	99.7457	99.5611	99.9309	58.9350	11569	51	11567	8	6	75.0000
raldana-dualsentieon	SNP	*	map_l100_m2_e0	homalt	99.8291	99.7275	99.9308	59.5568	27448	75	27448	19	15	78.9474
ckim-gatk	SNP	ti	map_l125_m2_e0	homalt	77.6462	63.4883	99.9307	75.7176	7211	4147	7211	5	4	80.0000
jlack-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8935	99.8564	99.9306	55.5702	20170	29	20170	14	13	92.8571
ltrigg-rtg2	SNP	*	HG002complexvar	het	99.8358	99.7414	99.9305	18.3888	464296	1204	464515	323	94	29.1022
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5046	99.0824	99.9304	64.6956	11446	106	11491	8	6	75.0000
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5046	99.0824	99.9304	64.6956	11446	106	11491	8	6	75.0000
ndellapenna-hhga	SNP	tv	map_siren	homalt	99.8287	99.7274	99.9303	55.1755	17193	47	17193	12	10	83.3333
ckim-vqsr	SNP	*	*	*	99.2866	98.6511	99.9303	23.6837	3013415	41204	3013272	2101	144	6.8539
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7216	99.5139	99.9303	67.9123	1433	7	1433	1	0	0.0000
egarrison-hhga	SNP	ti	map_l125_m2_e1	homalt	99.8253	99.7207	99.9300	68.7014	11426	32	11426	8	8	100.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	27.1057	1427	0	1427	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	26.8817	1427	0	1427	1	1	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9300	99.9299	99.9300	23.7460	1426	1	1428	1	1	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9300	99.9299	99.9300	24.2713	1426	1	1428	1	1	100.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	27.1057	1427	0	1427	1	1	100.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5469	99.1667	99.9300	67.8732	1428	12	1428	1	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	30.2053	1427	0	1427	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	26.8443	1427	0	1427	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	26.9939	1427	0	1427	1	1	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8949	99.8598	99.9299	27.9657	1425	2	1426	1	0	0.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9299	99.9299	99.9299	28.6857	1426	1	1426	1	1	100.0000
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8598	99.7898	99.9299	28.4855	1424	3	1425	1	0	0.0000
jli-custom	SNP	ti	map_l125_m2_e1	homalt	99.7552	99.5811	99.9299	65.1529	11410	48	11410	8	8	100.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7960	99.6623	99.9299	57.3191	17119	58	17115	12	5	41.6667
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8598	99.7898	99.9299	26.0373	1424	3	1425	1	1	100.0000
asubramanian-gatk	SNP	ti	*	het	99.0688	98.2225	99.9298	21.0842	1259105	22786	1259055	884	67	7.5792
egarrison-hhga	SNP	ti	map_l100_m2_e1	homalt	99.8593	99.7891	99.9296	62.7744	18455	39	18455	13	13	100.0000
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	homalt	99.8214	99.7134	99.9296	58.8080	18441	53	18441	13	12	92.3077
raldana-dualsentieon	SNP	*	map_l100_m1_e0	homalt	99.8258	99.7223	99.9295	56.9722	26928	75	26928	19	15	78.9474
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	homalt	99.8051	99.6810	99.9295	59.8306	18435	59	18434	13	13	100.0000
dgrover-gatk	SNP	ti	map_l100_m2_e1	homalt	99.7264	99.5242	99.9294	59.8793	18406	88	18406	13	11	84.6154
egarrison-hhga	SNP	ti	map_l125_m2_e0	homalt	99.8237	99.7183	99.9294	68.6664	11326	32	11326	8	8	100.0000
ckim-isaac	SNP	tv	map_l125_m2_e1	homalt	63.5067	46.5426	99.9293	67.7423	2827	3247	2827	2	2	100.0000
jli-custom	SNP	ti	map_l125_m2_e0	homalt	99.7530	99.5774	99.9293	65.1271	11310	48	11310	8	8	100.0000
astatham-gatk	SNP	ti	func_cds	het	99.8234	99.7178	99.9293	24.2094	8480	24	8478	6	0	0.0000
jlack-gatk	SNP	*	HG002complexvar	*	99.9118	99.8944	99.9292	19.3948	753584	797	753425	534	201	37.6404
hfeng-pmm1	SNP	ti	HG002compoundhet	*	98.2873	96.6987	99.9291	34.1329	16901	577	16902	12	8	66.6667
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8584	99.9291	56.1359	11280	16	11280	8	7	87.5000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3658	98.8087	99.9291	27.0801	1410	17	1410	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3658	98.8087	99.9291	26.8533	1410	17	1410	1	1	100.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.6524	97.4079	99.9291	42.5020	1428	38	1410	1	0	0.0000
asubramanian-gatk	SNP	tv	map_l125_m1_e0	homalt	38.6733	23.9761	99.9289	88.4461	1405	4455	1405	1	0	0.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8303	99.7319	99.9289	55.1102	25291	68	25294	18	12	66.6667

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