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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
14201-14250 / 86044 show all
dgrover-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8406
95.8333
99.9338
44.4975
2990130301922
100.0000
gduggal-bwafbSNPtimap_sirenhomalt
99.7291
99.5253
99.9338
52.9575
37736180377362514
56.0000
gduggal-snapplatSNPti*homalt
99.4971
99.0644
99.9337
17.3977
7955267513795327528217
41.0985
gduggal-snapvardSNP**homalt
99.4378
98.9468
99.9337
17.0443
1167733124291158113768475
61.8490
gduggal-snapplatSNP*map_l125_m1_e0homalt
94.1655
89.0269
99.9336
67.4179
15050185515040109
90.0000
jli-customSNPtvmap_l100_m1_e0homalt
99.7840
99.6351
99.9335
58.3614
901033901065
83.3333
egarrison-hhgaSNPtvmap_l100_m1_e0homalt
99.8284
99.7235
99.9335
62.1365
901825901865
83.3333
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3474
98.7681
99.9335
54.7798
601375601344
100.0000
asubramanian-gatkSNPtvmap_l125_m2_e0homalt
39.9681
24.9792
99.9335
89.0706
15034514150310
0.0000
raldana-dualsentieonSNPtvmap_l100_m1_e0homalt
99.8450
99.7567
99.9335
58.3702
902122902163
50.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50het
97.5443
95.2668
99.9334
69.5454
2999149299922
100.0000
ltrigg-rtg1SNPtvmap_l125_m2_e0homalt
99.8420
99.7507
99.9334
68.3459
600215600344
100.0000
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.4487
86.0070
99.9334
30.1720
1469239150111
100.0000
hfeng-pmm1SNPtisegduphomalt
99.9467
99.9600
99.9334
88.2045
75023750255
100.0000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.4148
85.9485
99.9334
29.8926
1468240150011
100.0000
ckim-gatkSNP*map_l125_m1_e0homalt
76.5547
62.0408
99.9333
74.4573
1048864171048874
57.1429
ltrigg-rtg2SNPtvmap_l125_m2_e0homalt
99.7836
99.6344
99.9333
66.1132
599522599643
75.0000
ckim-gatkSNPtimap_l100_m2_e0homalt
84.7018
73.4994
99.9332
67.2925
1345748521345797
77.7778
gduggal-snapplatSNP*map_sirenhomalt
97.4154
95.0214
99.9332
54.3867
524102746523613523
65.7143
egarrison-hhgaSNP*map_l100_m1_e0homalt
99.8480
99.7630
99.9332
60.8894
2693964269391817
94.4444
egarrison-hhgaSNPtimap_l100_m1_e0homalt
99.8579
99.7829
99.9331
60.2302
1792139179211212
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7995
99.6662
99.9331
80.2093
14935149310
0.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7995
99.6662
99.9331
79.6097
14935149311
100.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
82.3251
14926149210
0.0000
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
82.9644
14926149210
0.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
79.8733
14926149211
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
79.6677
14926149211
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6989
99.4660
99.9329
79.6894
14908149011
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5646
99.1989
99.9329
79.3662
148612149011
100.0000
hfeng-pmm1SNPtiHG002compoundhethet
96.8662
93.9821
99.9329
37.3774
8933572893462
33.3333
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7347
99.5374
99.9328
57.9303
163537616352114
36.3636
gduggal-bwaplatSNPtiHG002complexvarhomalt
98.4485
97.0077
99.9328
19.1570
1876745789187425126109
86.5079
bgallagher-sentieonINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.0999
94.4231
99.9328
43.7027
2946174297522
100.0000
ckim-isaacSNP*map_l125_m2_e1homalt
67.3574
50.7985
99.9327
65.6358
89068626890666
100.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7041
99.4765
99.9327
57.5361
163438616341114
36.3636
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4634
98.9987
99.9326
79.6378
148315148311
100.0000
hfeng-pmm3SNPtiHG002compoundhethomalt
99.9256
99.9189
99.9324
30.4123
73886738855
100.0000
ckim-gatkSNPtimap_l150_m2_e1homalt
73.1394
57.6758
99.9324
81.1976
44373256443732
66.6667
ltrigg-rtg2SNP*map_l150_m2_e1homalt
99.7374
99.5434
99.9321
70.4609
11773541177987
87.5000
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.4342
93.1731
99.9319
40.7661
2907213293621
50.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6313
99.3324
99.9319
72.9366
148810146811
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9318
99.9318
99.9318
43.0237
14651146511
100.0000
ckim-isaacSNPtv**
98.3371
96.7926
99.9317
18.3312
93859631102938905642418
65.1090
jmaeng-gatkSNPtiHG002compoundhethomalt
99.4701
99.0127
99.9317
30.6381
732173732155
100.0000
ltrigg-rtg1SNPtvmap_l125_m1_e0homalt
99.8377
99.7440
99.9316
65.7995
584515584644
100.0000
ckim-gatkSNPtimap_l125_m2_e1homalt
77.8127
63.7109
99.9316
75.6597
73004158730054
80.0000
ckim-gatkSNPtimap_l150_m2_e0homalt
73.0167
57.5236
99.9316
81.2297
43813235438132
66.6667
ltrigg-rtg2SNPtvmap_l125_m1_e0homalt
99.7778
99.6246
99.9315
63.2977
583822583943
75.0000
raldana-dualsentieonSNP*map_l100_m2_e1homalt
99.8307
99.7302
99.9315
59.5367
2772175277211915
78.9474
egarrison-hhgaSNP*map_l100_m2_e1homalt
99.8506
99.7698
99.9315
63.4220
2773264277321918
94.7368