PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 280 281 282 283 284 285 286 287 288 ... 1720 1721 » 14151-14200 / 86044 show all
bgallagher-sentieon	SNP	tv	map_siren	homalt	99.8607	99.7854	99.9361	52.7521	17203	37	17200	11	9	81.8182
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8244	99.7128	99.9361	40.9541	6250	18	6259	4	3	75.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8803	99.8245	99.9361	43.9129	6257	11	6257	4	3	75.0000
dgrover-gatk	SNP	tv	map_siren	homalt	99.7938	99.6520	99.9360	53.0780	17180	60	17177	11	9	81.8182
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	98.3834	96.8782	99.9360	67.6999	4686	151	4686	3	3	100.0000
ckim-gatk	SNP	*	map_l125_m2_e0	homalt	77.1330	62.8029	99.9359	76.3243	10912	6463	10912	7	4	57.1429
ckim-dragen	SNP	tv	HG002complexvar	*	99.9267	99.9175	99.9359	22.5633	245949	203	246200	158	80	50.6329
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8395	99.7434	99.9357	57.3637	10883	28	10887	7	4	57.1429
cchapple-custom	SNP	ti	map_l250_m1_e0	homalt	98.2278	96.5775	99.9356	83.5174	1552	55	1551	1	1	100.0000
rpoplin-dv42	INDEL	I6_15	HG002compoundhet	hetalt	95.0099	90.5470	99.9355	28.7042	7730	807	7742	5	5	100.0000
gduggal-bwaplat	SNP	*	map_l150_m1_e0	homalt	58.4217	41.2756	99.9355	84.5500	4653	6620	4649	3	3	100.0000
egarrison-hhga	SNP	ti	map_l100_m0_e0	homalt	99.8003	99.6656	99.9355	61.1047	7748	26	7748	5	5	100.0000
gduggal-snapplat	SNP	*	map_l125_m2_e0	homalt	94.2904	89.2489	99.9355	69.8671	15507	1868	15497	10	9	90.0000
ltrigg-rtg2	SNP	ti	map_l100_m0_e0	homalt	99.7358	99.5369	99.9354	58.2970	7738	36	7738	5	5	100.0000
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	homalt	99.8494	99.7635	99.9354	60.9109	9280	22	9280	6	3	50.0000
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	homalt	99.6905	99.4469	99.9354	59.4017	7731	43	7731	5	5	100.0000
egarrison-hhga	SNP	tv	map_l100_m2_e1	homalt	99.8332	99.7312	99.9354	64.6456	9277	25	9277	6	5	83.3333
asubramanian-gatk	SNP	*	HG002complexvar	*	98.2310	96.5837	99.9354	19.5730	728609	25772	728466	471	54	11.4650
jli-custom	SNP	tv	map_l100_m2_e1	homalt	99.7847	99.6345	99.9353	60.9647	9268	34	9268	6	5	83.3333
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5445	99.1568	99.9353	61.6132	10819	92	10815	7	5	71.4286
ckim-isaac	SNP	tv	HG002complexvar	het	95.8287	92.0463	99.9352	18.9218	138745	11989	138887	90	17	18.8889
ltrigg-rtg2	SNP	*	map_l100_m2_e1	homalt	99.8127	99.6906	99.9351	60.3846	27710	86	27708	18	16	88.8889
ndellapenna-hhga	SNP	*	HG002complexvar	*	99.7910	99.6474	99.9350	18.9550	751721	2660	751769	489	351	71.7791
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6595	99.3855	99.9350	53.0212	6146	38	6146	4	0	0.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7048	99.4757	99.9349	66.5658	16886	89	16886	11	11	100.0000
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.9241	99.9133	99.9349	33.6595	4612	4	4607	3	2	66.6667
raldana-dualsentieon	SNP	tv	map_l100_m2_e0	homalt	99.8479	99.7612	99.9348	60.9327	9192	22	9192	6	3	50.0000
rpoplin-dv42	SNP	ti	func_cds	*	99.9420	99.9492	99.9347	23.0636	13780	7	13778	9	2	22.2222
astatham-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4718	99.0131	99.9347	60.3688	55082	549	55072	36	19	52.7778
egarrison-hhga	SNP	tv	map_l100_m2_e0	homalt	99.8316	99.7287	99.9347	64.6441	9189	25	9189	6	5	83.3333
jli-custom	SNP	tv	map_l100_m2_e0	homalt	99.7826	99.6310	99.9347	60.9754	9180	34	9180	6	5	83.3333
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4788	99.0272	99.9346	76.0876	1527	15	1527	1	0	0.0000
asubramanian-gatk	SNP	tv	map_l125_m2_e1	homalt	40.1526	25.1235	99.9345	89.0207	1526	4548	1526	1	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6121	99.2918	99.9344	37.2432	10656	76	10656	7	1	14.2857
ltrigg-rtg2	SNP	*	map_l100_m2_e0	homalt	99.8108	99.6875	99.9344	60.3899	27437	86	27435	18	16	88.8889
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9507	99.9671	99.9343	54.3615	6086	2	6086	4	4	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9425	99.9507	99.9343	54.5644	6085	3	6088	4	4	100.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.4380	6084	4	6084	4	4	100.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.3868	6084	4	6084	4	4	100.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8767	99.8193	99.9342	54.4187	6077	11	6077	4	4	100.0000
ckim-isaac	SNP	ti	map_l125_m2_e1	homalt	69.3119	53.0546	99.9342	64.5595	6079	5379	6079	4	4	100.0000
ltrigg-rtg1	SNP	tv	map_l125_m2_e1	homalt	99.8435	99.7530	99.9341	68.3791	6059	15	6065	4	4	100.0000
ltrigg-rtg2	SNP	*	HG002compoundhet	homalt	99.4265	98.9241	99.9340	32.8863	10666	116	10603	7	6	85.7143
ltrigg-rtg2	SNP	tv	map_l125_m2_e1	homalt	99.7857	99.6378	99.9340	66.1624	6052	22	6058	4	3	75.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9204	86.8267	99.9340	30.1521	1483	225	1514	1	1	100.0000
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7119	99.4908	99.9340	54.5993	6057	31	6057	4	4	100.0000
ckim-gatk	SNP	ti	map_l100_m2_e1	homalt	84.8134	73.6671	99.9340	67.2110	13624	4870	13624	9	7	77.7778
ckim-dragen	SNP	ti	map_siren	homalt	99.7132	99.4936	99.9338	47.4447	37724	192	37726	25	23	92.0000
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	96.7618	93.7850	99.9338	39.2110	1509	100	1509	1	1	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge