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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 278 279 280 281 282 283 284 285 286 ... 1720 1721 » 14051-14100 / 86044 show all
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9214	99.9010	99.9417	55.7201	17160	17	17156	10	8	80.0000
hfeng-pmm2	INDEL	*	*	hetalt	96.9055	94.0484	99.9416	58.8044	23735	1502	23954	14	12	85.7143
cchapple-custom	SNP	ti	map_l250_m2_e1	homalt	98.1620	96.4447	99.9415	84.8962	1709	63	1708	1	1	100.0000
jmaeng-gatk	SNP	ti	map_l100_m2_e1	homalt	84.9915	73.9321	99.9415	66.3568	13673	4821	13673	8	7	87.5000
gduggal-bwavard	INDEL	I1_5	HG002complexvar	homalt	96.0632	92.4747	99.9414	32.6716	12436	1012	11931	7	5	71.4286
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.3879	98.8406	99.9413	37.5183	3410	40	3407	2	1	50.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5470	99.1558	99.9413	57.3410	17032	145	17028	10	8	80.0000
ckim-vqsr	SNP	ti	map_l125_m1_e0	homalt	46.9945	30.7198	99.9411	85.1863	3393	7652	3393	2	2	100.0000
ckim-isaac	SNP	*	map_l125_m1_e0	homalt	66.8137	50.1804	99.9411	61.4585	8483	8422	8483	5	5	100.0000
egarrison-hhga	SNP	tv	HG002complexvar	homalt	99.8748	99.8086	99.9410	22.7459	94929	182	94938	56	46	82.1429
gduggal-bwafb	SNP	tv	HG002complexvar	homalt	99.8685	99.7960	99.9410	22.9952	94917	194	94931	56	49	87.5000
ltrigg-rtg1	SNP	tv	HG002complexvar	*	99.8396	99.7384	99.9410	21.7226	245511	644	245768	145	59	40.6897
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9214	99.9410	54.0442	10170	8	10170	6	6	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.0071	94.2405	99.9409	41.4127	1669	102	1691	1	1	100.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5299	99.1222	99.9409	66.9776	16826	149	16910	10	6	60.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5299	99.1222	99.9409	66.9776	16826	149	16910	10	6	60.0000
jmaeng-gatk	SNP	ti	map_l100_m2_e0	homalt	84.8820	73.7670	99.9408	66.4315	13506	4803	13506	8	7	87.5000
gduggal-bwaplat	SNP	*	map_l150_m2_e1	homalt	59.9917	42.8596	99.9408	85.5254	5069	6758	5065	3	3	100.0000
ckim-gatk	SNP	*	map_l150_m2_e1	homalt	72.6891	57.1151	99.9408	81.5997	6755	5072	6755	4	2	50.0000
cchapple-custom	SNP	ti	map_l250_m2_e0	homalt	98.1670	96.4551	99.9407	84.8332	1687	62	1686	1	1	100.0000
ckim-dragen	INDEL	I1_5	HG002complexvar	hetalt	97.1421	94.4959	99.9407	69.6380	1631	95	1685	1	1	100.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.8223	99.9407	64.3853	1685	3	1685	1	0	0.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.9111	99.8815	99.9407	63.6892	1686	2	1686	1	1	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8006	99.6609	99.9407	54.5675	25273	86	25275	15	11	73.3333
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9333	99.9259	99.9407	34.6955	6740	5	6740	4	3	75.0000
ltrigg-rtg2	SNP	*	map_l100_m1_e0	homalt	99.8127	99.6852	99.9406	57.7080	26918	85	26916	16	14	87.5000
ltrigg-rtg2	SNP	*	map_l125_m1_e0	homalt	99.7511	99.5623	99.9406	63.1402	16831	74	16832	10	9	90.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7923	99.6445	99.9406	65.1625	1682	6	1682	1	1	100.0000
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8762	99.8119	99.9405	50.3909	10083	19	10083	6	5	83.3333
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7031	99.4668	99.9405	63.6364	1679	9	1679	1	1	100.0000
jlack-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8910	99.8415	99.9405	60.8743	10081	16	10081	6	6	100.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8860	99.8316	99.9405	61.6312	10080	17	10080	6	4	66.6667
jli-custom	SNP	ti	map_l100_m2_e1	homalt	99.7997	99.6593	99.9404	59.0260	18431	63	18431	11	11	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.5561	93.3936	99.9404	41.4660	1654	117	1676	1	1	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.5561	93.3936	99.9404	41.2198	1654	117	1676	1	1	100.0000
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	97.7441	95.6423	99.9404	50.0892	1690	77	1677	1	1	100.0000
ckim-vqsr	SNP	*	map_l125_m1_e0	homalt	45.7370	29.6539	99.9402	85.9137	5013	11892	5013	3	2	66.6667
ckim-isaac	SNP	tv	map_l150_m1_e0	homalt	59.4623	42.3213	99.9402	68.6492	1670	2276	1670	1	1	100.0000
gduggal-snapvard	SNP	tv	func_cds	homalt	99.2613	98.5915	99.9402	26.1484	1680	24	1671	1	1	100.0000
egarrison-hhga	SNP	*	HG002complexvar	homalt	99.8875	99.8351	99.9400	19.8887	288098	476	288126	173	140	80.9249
ckim-gatk	SNP	*	map_l150_m2_e0	homalt	72.5580	56.9536	99.9400	81.6478	6663	5036	6663	4	2	50.0000
gduggal-bwaplat	SNP	*	map_l150_m2_e0	homalt	59.7639	42.6276	99.9398	85.5833	4987	6712	4983	3	3	100.0000
jli-custom	SNP	ti	map_l100_m2_e0	homalt	99.8004	99.6614	99.9398	59.0453	18247	62	18247	11	11	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	95.9181	92.2078	99.9396	36.0371	1633	138	1655	1	1	100.0000
jlack-gatk	SNP	ti	HG002complexvar	*	99.9170	99.8944	99.9396	17.8349	507899	537	507834	307	122	39.7394
ndellapenna-hhga	SNP	tv	*	*	99.8629	99.7865	99.9395	20.8763	967620	2070	967646	586	175	29.8635
egarrison-hhga	SNP	ti	HG002complexvar	homalt	99.8937	99.8480	99.9395	18.4037	193169	294	193188	117	94	80.3419
gduggal-snapplat	SNP	ti	map_siren	homalt	97.6833	95.5270	99.9392	52.4384	36220	1696	36180	22	18	81.8182

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