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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13801-13850 / 86044 show all
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8378
99.7231
99.9528
67.2930
16928471692886
75.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8378
99.7231
99.9528
67.2930
16928471692886
75.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8880
99.8233
99.9528
71.8323
16945301694585
62.5000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8880
99.8233
99.9528
71.8323
16945301694585
62.5000
jli-customINDELI1_5*hetalt
96.7648
93.7740
99.9527
62.3212
104986971055955
100.0000
egarrison-hhgaSNPti*het
99.8877
99.8228
99.9527
17.2025
12796192272127962260680
13.2013
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7905
99.6289
99.9527
66.4771
16912631691287
87.5000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7905
99.6289
99.9527
66.4771
16912631691287
87.5000
jmaeng-gatkSNPtvHG002complexvarhet
99.6867
99.4221
99.9526
22.2557
1498608711497827116
22.5352
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8000
99.6479
99.9525
54.9426
14718521472071
14.2857
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8105
99.6688
99.9525
54.4112
252758425277127
58.3333
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7626
99.5735
99.9524
54.0128
14707631470872
28.5714
bgallagher-sentieonSNPtimap_sirenhomalt
99.8535
99.7547
99.9524
48.7705
3782393378171816
88.8889
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1847
94.5662
99.9523
34.2023
2071119209411
100.0000
ckim-isaacSNP*segduphet
98.3305
96.7604
99.9523
88.4697
167565611675881
12.5000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9043
99.9521
44.5722
62626626233
100.0000
hfeng-pmm1SNPtvHG002compoundhethet
94.3861
89.4072
99.9521
52.4903
4178495417622
100.0000
cchapple-customSNP*HG002compoundhethomalt
99.5150
99.0818
99.9520
31.0764
10683991041955
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.7763
99.6011
99.9520
41.2692
624325625333
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7486
93.7443
99.9519
34.1888
2053137207611
100.0000
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7729
93.7900
99.9519
33.6738
2054136207711
100.0000
ndellapenna-hhgaSNP***
99.8818
99.8118
99.9519
18.1821
3048871574830489191468467
31.8120
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6158
99.2821
99.9518
44.5938
622345622332
66.6667
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.5515
99.1544
99.9518
47.1169
621553621533
100.0000
ckim-vqsrINDELI1_5*hetalt
95.5907
91.5945
99.9516
60.1444
102549411031655
100.0000
ltrigg-rtg1SNPtvmap_l150_m2_e1homalt
99.8426
99.7339
99.9516
72.6103
412311412722
100.0000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.5047
93.2877
99.9516
30.4275
2043147206611
100.0000
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.1644
85.5030
99.9515
30.1491
2023343206111
100.0000
ltrigg-rtg2SNPtvmap_l150_m2_e1homalt
99.7941
99.6372
99.9515
70.3259
411915412321
50.0000
ndellapenna-hhgaSNPti*het
99.8668
99.7824
99.9512
16.9483
12791022789127910362483
13.3013
ltrigg-rtg1SNP*HG002complexvarhet
99.8148
99.6788
99.9511
18.4181
464005149546423522759
25.9912
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7102
99.4704
99.9511
57.5377
16342871634081
12.5000
raldana-dualsentieonSNPti**
99.9357
99.9205
99.9510
17.0225
208385316582083794102254
5.2838
ckim-vqsrSNPti**
99.3455
98.7474
99.9510
21.8102
2059387261242059330100989
8.8206
egarrison-hhgaSNP*map_sirenhomalt
99.8639
99.7770
99.9510
53.4112
55033123550332724
88.8889
egarrison-hhgaSNPtiHG002complexvar*
99.8425
99.7343
99.9509
17.5278
5070851351507107249148
59.4378
ltrigg-rtg2SNPtvmap_l150_m2_e0homalt
99.7915
99.6326
99.9509
70.3193
406815406921
50.0000
ltrigg-rtg1SNPtvmap_l150_m2_e0homalt
99.8529
99.7551
99.9509
72.6094
407310407422
100.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9263
99.9017
99.9509
53.9245
10168101016855
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9016
99.9508
45.9204
40614406121
50.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.5177
91.4612
99.9507
31.0075
2003187202611
100.0000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8276
99.7048
99.9507
44.3071
405312405322
100.0000
egarrison-hhgaSNP*HG002complexvar*
99.8252
99.7002
99.9506
18.9844
7521192262752170372223
59.9462
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.5939
99.2396
99.9506
44.1181
404631405021
50.0000
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9232
99.8960
99.9505
56.3257
2017821201781010
100.0000
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9456
99.9406
99.9505
49.3379
1009661009655
100.0000
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9604
99.9703
99.9505
48.8948
1009931009955
100.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7449
99.5401
99.9505
54.6217
606028606033
100.0000
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9307
99.9505
49.4545
1009571009553
60.0000