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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 272 273 274 275 276 277 278 279 280 ... 1720 1721 » 13751-13800 / 86044 show all
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.3303	92.9589	99.9555	30.3660	4436	336	4488	2	2	100.0000
jmaeng-gatk	SNP	*	map_l100_m2_e1	homalt	84.2134	72.7551	99.9555	67.5514	20223	7573	20223	9	8	88.8889
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8169	93.8695	99.9554	27.7467	6676	436	6718	3	2	66.6667
ckim-isaac	SNP	ti	map_l100_m2_e1	homalt	75.4653	60.6143	99.9554	56.7172	11210	7284	11210	5	5	100.0000
jmaeng-gatk	SNP	ti	HG002complexvar	het	99.7293	99.5044	99.9553	17.6005	313206	1560	313156	140	49	35.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0482	92.4350	99.9552	27.1689	4411	361	4464	2	2	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.3167	94.8139	99.9552	24.2743	4406	241	4459	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0708	92.4769	99.9552	27.1601	4413	359	4466	2	2	100.0000
egarrison-hhga	SNP	ti	map_siren	homalt	99.8640	99.7732	99.9551	52.1965	37830	86	37830	17	15	88.2353
ckim-isaac	SNP	*	map_l100_m1_e0	homalt	73.0435	57.5492	99.9550	54.3192	15540	11463	15540	7	7	100.0000
jmaeng-gatk	SNP	*	map_l100_m2_e0	homalt	84.0977	72.5829	99.9550	67.6272	19977	7546	19977	9	8	88.8889
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6962	93.6431	99.9550	34.4875	13140	892	13333	6	5	83.3333
astatham-gatk	SNP	ti	map_siren	homalt	99.7489	99.5437	99.9550	48.8366	37743	173	37737	17	16	94.1176
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7189	91.8273	99.9549	27.3874	4382	390	4431	2	2	100.0000
ckim-isaac	SNP	ti	map_l100_m2_e0	homalt	75.4234	60.5604	99.9549	56.7558	11088	7221	11088	5	5	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0210	94.2544	99.9549	27.4378	4380	267	4433	2	2	100.0000
ltrigg-rtg1	SNP	tv	map_l125_m0_e0	homalt	99.7971	99.6398	99.9548	70.1295	2213	8	2213	1	1	100.0000
asubramanian-gatk	SNP	ti	*	*	99.0306	98.1234	99.9548	19.2315	2046375	39136	2046316	926	90	9.7192
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8954	94.0176	99.9548	27.2727	4369	278	4422	2	2	100.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4523	93.1870	99.9548	33.8499	13076	956	13269	6	5	83.3333
ltrigg-rtg2	SNP	tv	map_l125_m0_e0	homalt	99.7066	99.4597	99.9548	66.5911	2209	12	2209	1	0	0.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7559	99.5579	99.9547	55.7919	11035	49	11032	5	2	40.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7378	99.5218	99.9547	55.5264	11031	53	11028	5	1	20.0000
ltrigg-rtg2	SNP	*	map_siren	homalt	99.8557	99.7571	99.9546	50.5157	55022	134	55010	25	22	88.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.7232	2199	2	2199	1	1	100.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.3026	2199	2	2199	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.4084	2199	2	2199	1	1	100.0000
jmaeng-gatk	SNP	*	HG002complexvar	het	99.7155	99.4778	99.9544	19.1665	463066	2431	462938	211	65	30.8057
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3053	98.6647	99.9543	56.5280	10936	148	10933	5	2	40.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3667	93.0278	99.9543	26.6834	4323	324	4375	2	2	100.0000
bgallagher-sentieon	SNP	tv	HG002complexvar	het	99.9389	99.9237	99.9542	21.4883	150616	115	150540	69	21	30.4348
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.7189	93.6864	99.9542	31.7179	12895	869	13083	6	5	83.3333
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1236	92.5759	99.9541	23.6819	4302	345	4355	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1468	92.6189	99.9541	23.6736	4304	343	4357	2	2	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8072	99.6609	99.9540	61.5860	10874	37	10870	5	2	40.0000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2451	98.5461	99.9540	42.2689	2169	32	2172	1	1	100.0000
ndellapenna-hhga	SNP	tv	HG002complexvar	het	99.7024	99.4520	99.9540	21.1664	149905	826	149923	69	30	43.4783
ckim-isaac	SNP	tv	map_siren	homalt	77.1855	62.8654	99.9539	50.4637	10838	6402	10838	5	5	100.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.4704	93.2214	99.9539	31.0883	12831	933	13019	6	5	83.3333
jmaeng-gatk	SNP	tv	map_l150_m1_e0	homalt	70.8865	54.9164	99.9539	80.1411	2167	1779	2167	1	1	100.0000
ckim-gatk	SNP	tv	map_l150_m1_e0	homalt	70.8020	54.8150	99.9538	81.0192	2163	1783	2163	1	0	0.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.7859	91.9518	99.9537	23.9402	4273	374	4322	2	2	100.0000
ckim-isaac	SNP	ti	map_l100_m1_e0	homalt	75.0391	60.0668	99.9537	52.8051	10788	7172	10788	5	5	100.0000
ckim-isaac	SNP	tv	func_cds	*	99.2280	98.5129	99.9536	23.4678	4306	65	4306	2	0	0.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4917	99.0340	99.9536	62.8172	2153	21	2153	1	0	0.0000
ltrigg-rtg1	SNP	tv	map_siren	homalt	99.8926	99.8318	99.9535	54.5447	17211	29	17205	8	5	62.5000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8830	99.8129	99.9531	76.9081	2134	4	2132	1	1	100.0000
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.9532	99.9532	99.9531	38.2523	2137	1	2133	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.3145	96.7288	99.9531	38.9223	2129	72	2130	1	1	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6482	99.3452	99.9530	35.3102	2124	14	2126	1	1	100.0000

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