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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 270 271 272 273 274 275 276 277 278 ... 1720 1721 » 13651-13700 / 86044 show all
ckim-dragen	SNP	ti	segdup	homalt	99.9000	99.8401	99.9600	86.9440	7493	12	7493	3	3	100.0000
eyeh-varpipe	SNP	*	HG002compoundhet	hetalt	99.9219	99.8840	99.9599	21.9998	861	1	7478	3	2	66.6667
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0710	92.4735	99.9597	37.1168	2445	199	2481	1	1	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.1118	92.5492	99.9597	37.5723	2447	197	2483	1	1	100.0000
ckim-gatk	SNP	ti	segdup	homalt	99.4711	98.9873	99.9596	87.8310	7429	76	7429	3	3	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.9688	92.2844	99.9596	33.6636	2440	204	2476	1	1	100.0000
ckim-isaac	SNP	tv	map_l100_m2_e1	homalt	69.3075	53.0424	99.9595	61.1858	4934	4368	4934	2	2	100.0000
ckim-isaac	SNP	tv	map_l100_m2_e0	homalt	69.2951	53.0280	99.9591	61.2002	4886	4328	4886	2	2	100.0000
gduggal-bwaplat	SNP	ti	segdup	homalt	98.8821	97.8281	99.9591	88.2036	7342	163	7338	3	3	100.0000
jmaeng-gatk	SNP	*	map_l100_m1_e0	homalt	83.8037	72.1438	99.9590	65.3578	19481	7522	19481	8	8	100.0000
jmaeng-gatk	SNP	ti	map_l100_m0_e0	homalt	77.0009	62.6190	99.9589	69.2803	4868	2906	4868	2	2	100.0000
egarrison-hhga	SNP	ti	HG002complexvar	het	99.8118	99.6651	99.9589	16.9554	313712	1054	313715	129	51	39.5349
ckim-vqsr	SNP	ti	segdup	homalt	98.5954	97.2685	99.9589	88.0169	7300	205	7300	3	3	100.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8769	99.7950	99.9589	49.0692	2434	5	2434	1	0	0.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8152	99.6720	99.9589	50.5792	2431	8	2431	1	0	0.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4603	98.9667	99.9588	33.4796	7279	76	7275	3	2	66.6667
jli-custom	SNP	tv	HG002complexvar	het	99.9074	99.8560	99.9588	21.3761	150514	217	150454	62	22	35.4839
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9357	90.3933	99.9588	34.5998	2390	254	2426	1	1	100.0000
ltrigg-rtg1	SNP	*	HG002complexvar	*	99.8490	99.7395	99.9587	18.9301	752419	1965	752595	311	136	43.7299
jmaeng-gatk	SNP	ti	map_l125_m0_e0	homalt	70.0419	53.9078	99.9587	78.1072	2421	2070	2421	1	1	100.0000
hfeng-pmm3	SNP	tv	*	het	99.9161	99.8738	99.9586	21.3235	590949	747	590875	245	12	4.8980
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7512	99.5449	99.9585	78.7236	2406	11	2406	1	0	0.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5801	93.4226	99.9585	35.8626	2372	167	2408	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7512	99.5449	99.9585	79.2911	2406	11	2406	1	0	0.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	74.2163	2409	8	2409	1	1	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	73.0075	2407	10	2407	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.8523	2407	10	2407	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	72.5387	2409	8	2409	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.9893	2407	10	2407	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6889	99.4208	99.9584	73.0221	2403	14	2403	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7097	99.4621	99.9584	72.8647	2404	13	2404	1	1	100.0000
jmaeng-gatk	SNP	*	map_l100_m0_e0	homalt	76.4825	61.9363	99.9583	70.3301	7197	4423	7197	3	3	100.0000
eyeh-varpipe	SNP	tv	*	homalt	99.9630	99.9676	99.9583	19.9401	377001	122	371165	155	57	36.7742
ndellapenna-hhga	SNP	tv	*	homalt	99.9152	99.8722	99.9583	20.9089	376641	482	376648	157	123	78.3439
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.4177	98.8829	99.9582	72.7717	2390	27	2394	1	1	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1785	92.6743	99.9582	35.8734	2353	186	2389	1	1	100.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	78.3900	64.4775	99.9582	58.4621	2425	1336	2392	1	0	0.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	78.3900	64.4775	99.9582	58.4621	2425	1336	2392	1	0	0.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1148	92.5561	99.9581	35.3992	2350	189	2386	1	1	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.0510	92.4380	99.9581	32.0604	2347	192	2383	1	1	100.0000
egarrison-hhga	SNP	*	HG002complexvar	het	99.7873	99.6172	99.9580	18.3902	463715	1782	463738	195	79	40.5128
ckim-isaac	SNP	tv	map_l100_m1_e0	homalt	68.8845	52.5489	99.9579	57.4205	4752	4291	4752	2	2	100.0000
hfeng-pmm2	SNP	*	*	*	99.9416	99.9254	99.9579	18.8175	3052339	2280	3052202	1287	114	8.8578
cchapple-custom	SNP	*	map_l250_m1_e0	homalt	98.0976	96.3053	99.9578	83.7177	2372	91	2371	1	1	100.0000
rpoplin-dv42	SNP	tv	HG002complexvar	*	99.9096	99.8615	99.9577	21.9240	245811	341	245702	104	87	83.6538
ckim-isaac	SNP	ti	*	*	98.6272	97.3318	99.9576	14.8667	2029873	55645	2030218	862	462	53.5963
ndellapenna-hhga	SNP	ti	*	*	99.8903	99.8233	99.9574	16.8793	2081825	3686	2081847	888	298	33.5586
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3331	98.7166	99.9574	29.1176	4692	61	4689	2	2	100.0000
mlin-fermikit	SNP	tv	HG002complexvar	het	98.0988	96.3081	99.9573	20.3091	145169	5565	145103	62	9	14.5161
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.9982	90.5081	99.9572	32.8251	2298	241	2334	1	1	100.0000

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