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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13551-13600 / 86044 show all
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1401
94.4708
99.9645
35.6743
5570326563122
100.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7964
99.6289
99.9645
66.6982
16912631691265
83.3333
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7964
99.6289
99.9645
66.6982
16912631691265
83.3333
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6662
99.3697
99.9644
66.5145
168681071686866
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6662
99.3697
99.9644
66.5145
168681071686866
100.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.8071
93.8433
99.9643
38.7051
5533363559322
100.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.8071
93.8433
99.9643
38.7051
5533363559322
100.0000
ckim-vqsrSNPtimap_l100_m2_e1homalt
61.9730
44.9065
99.9639
77.0833
830510189830533
100.0000
jmaeng-gatkSNPtvHG002complexvar*
99.5035
99.0473
99.9639
22.5835
24380723452437158831
35.2273
hfeng-pmm3SNP**het
99.9317
99.8994
99.9639
18.5779
18717021885187157867530
4.4444
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-isaacSNP*func_cdshet
99.4778
98.9965
99.9638
21.3254
110491121104940
0.0000
ckim-isaacSNP**het
98.6547
97.3796
99.9637
16.8583
182450549096182510166363
9.5023
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6729
97.4150
99.9636
52.1934
110042921099243
75.0000
gduggal-bwaplatSNP*map_l100_m0_e0homalt
64.1655
47.2461
99.9635
77.1816
54906130548422
100.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9269
99.8904
99.9635
30.9962
27353273511
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.6526
27362273611
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8729
99.7825
99.9635
34.6365
27526274111
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.1349
27362273611
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.7952
91.9607
99.9635
35.1166
5422474548022
100.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.7952
91.9607
99.9635
35.1166
5422474548022
100.0000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.9710
27362273611
100.0000
gduggal-bwaplatSNP*map_l125_m1_e0homalt
65.3285
48.5182
99.9634
78.9108
82028703819533
100.0000
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8538
99.7443
99.9634
32.0149
27317273210
0.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8537
99.7443
99.9634
30.7478
27317273111
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8538
99.7443
99.9634
29.9590
27317273211
100.0000
ckim-vqsrSNPtimap_l100_m2_e0homalt
61.7649
44.6884
99.9633
77.1942
818210127818233
100.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6701
99.9632
59.9499
10875361087243
75.0000
mlin-fermikitSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
98.9381
97.9340
99.9631
55.1737
108552291084840
0.0000
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6839
99.4064
99.9631
71.3354
217691302165588
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5837
99.2071
99.9631
70.9548
538043541920
0.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5837
99.2071
99.9631
70.9548
538043541920
0.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.5047
99.0504
99.9631
30.7908
271226271211
100.0000
ckim-isaacSNPtisegdup*
98.3830
96.8521
99.9630
86.8421
189226151892273
42.8571
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
raldana-dualsentieonSNPtimap_sirenhomalt
99.8878
99.8127
99.9630
48.3820
3784571378391414
100.0000
ndellapenna-hhgaSNPtiHG002complexvarhet
99.7687
99.5752
99.9630
16.8677
313429133731343011649
42.2414
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8061
99.6496
99.9630
75.1151
540419540421
50.0000
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8061
99.6496
99.9630
75.1151
540419540421
50.0000
jli-customINDELI6_15HG002compoundhethetalt
97.1767
94.5414
99.9630
28.7734
8071466810933
100.0000
hfeng-pmm2SNPti**
99.9484
99.9340
99.9629
17.4396
20841351376208407777472
9.3023
hfeng-pmm2INDELI6_15*hetalt
96.6097
93.4744
99.9627
39.2455
7993558803333
100.0000
ckim-vqsrSNP*map_l150_m1_e0homalt
38.4351
23.7914
99.9627
90.5070
26828591268211
100.0000
egarrison-hhgaSNPti**
99.9062
99.8498
99.9627
17.0848
208237931322082402778200
25.7069