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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 267 268 269 270 271 272 273 274 275 ... 1720 1721 » 13501-13550 / 86044 show all
ckim-vqsr	SNP	*	map_l150_m2_e1	homalt	40.3024	25.2389	99.9665	90.9405	2985	8842	2985	1	1	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.2004	94.5833	99.9665	44.9492	2951	169	2980	1	1	100.0000
hfeng-pmm1	SNP	*	*	het	99.9238	99.8812	99.9665	18.1036	1871361	2226	1871236	628	48	7.6433
hfeng-pmm3	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1835	94.5513	99.9664	44.3822	2950	170	2979	1	1	100.0000
hfeng-pmm3	SNP	ti	*	het	99.9388	99.9112	99.9664	17.2454	1280753	1138	1280703	430	18	4.1861
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	97.2091	94.5997	99.9664	68.3186	2978	170	2978	1	0	0.0000
ckim-vqsr	SNP	*	map_l100_m2_e1	homalt	59.9673	42.8299	99.9664	78.5551	11905	15891	11905	4	3	75.0000
rpoplin-dv42	SNP	*	HG002complexvar	*	99.9179	99.8694	99.9664	18.9545	753396	985	753221	253	214	84.5850
bgallagher-sentieon	SNP	*	HG002complexvar	het	99.9449	99.9235	99.9662	18.4844	465141	356	465011	157	50	31.8471
jmaeng-gatk	SNP	ti	HG002complexvar	*	99.5813	99.1995	99.9661	17.9457	504366	4070	504306	171	77	45.0292
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7251	99.4854	99.9660	53.9892	14694	76	14695	5	1	20.0000
ckim-vqsr	SNP	*	map_l100_m2_e0	homalt	59.7529	42.6116	99.9659	78.6625	11728	15795	11728	4	3	75.0000
ckim-vqsr	SNP	*	map_l150_m2_e0	homalt	40.0656	25.0534	99.9659	91.0042	2931	8768	2931	1	1	100.0000
asubramanian-gatk	SNP	*	map_l100_m0_e0	homalt	40.2612	25.2065	99.9659	86.1052	2929	8691	2929	1	0	0.0000
ckim-isaac	SNP	ti	segdup	het	98.4687	97.0158	99.9657	87.9143	11671	359	11671	4	0	0.0000
gduggal-bwaplat	SNP	ti	map_l100_m2_e1	homalt	77.3423	63.0691	99.9657	71.0565	11664	6830	11653	4	4	100.0000
jmaeng-gatk	SNP	*	HG002complexvar	*	99.5566	99.1508	99.9656	19.5091	747975	6406	747823	257	106	41.2451
gduggal-bwaplat	SNP	*	map_l125_m2_e1	homalt	66.3796	49.6863	99.9655	80.4451	8711	8821	8704	3	3	100.0000
dgrover-gatk	SNP	tv	HG002complexvar	het	99.9396	99.9138	99.9655	21.5720	150601	130	150525	52	21	40.3846
raldana-dualsentieon	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.7931	91.9551	99.9655	41.6230	2869	251	2898	1	1	100.0000
raldana-dualsentieon	SNP	*	map_siren	homalt	99.8920	99.8187	99.9655	49.6673	55056	100	55047	19	19	100.0000
asubramanian-gatk	SNP	*	*	homalt	98.8858	97.8294	99.9654	17.5292	1154544	25617	1154521	400	39	9.7500
ckim-gatk	SNP	*	map_siren	homalt	91.0516	83.5974	99.9653	55.1658	46109	9047	46100	16	14	87.5000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.9134	99.8615	99.9653	69.5900	11536	16	11536	4	3	75.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.9134	99.8615	99.9653	69.5900	11536	16	11536	4	3	75.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8787	99.7922	99.9653	69.1476	11528	24	11528	4	2	50.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8787	99.7922	99.9653	69.1476	11528	24	11528	4	2	50.0000
dgrover-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9282	99.8911	99.9653	56.4446	20177	22	20177	7	7	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7942	99.6237	99.9652	56.3615	20123	76	20123	7	7	100.0000
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8116	99.6584	99.9652	56.5451	20130	69	20130	7	7	100.0000
gduggal-bwaplat	SNP	ti	map_l100_m2_e0	homalt	77.1723	62.8434	99.9652	71.1284	11506	6803	11495	4	4	100.0000
gduggal-bwaplat	SNP	*	map_l125_m2_e0	homalt	66.1790	49.4619	99.9651	80.4937	8594	8781	8587	3	3	100.0000
ltrigg-rtg2	SNP	tv	map_siren	homalt	99.8781	99.7912	99.9651	52.8102	17204	36	17198	6	4	66.6667
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.9243	99.8836	99.9650	55.5651	17157	20	17153	6	5	83.3333
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8222	99.6798	99.9650	55.3292	17122	55	17119	6	2	33.3333
ltrigg-rtg1	INDEL	D1_5	*	homalt	99.7747	99.5851	99.9650	56.3253	48723	203	48596	17	16	94.1176
ndellapenna-hhga	SNP	*	*	homalt	99.9243	99.8838	99.9648	18.1151	1178790	1371	1178818	415	332	80.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3638	94.8948	99.9647	39.6673	5595	301	5656	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3638	94.8948	99.9647	39.6673	5595	301	5656	2	2	100.0000
astatham-gatk	SNP	tv	*	het	99.2722	98.5893	99.9647	23.3815	583349	8347	583282	206	35	16.9903
gduggal-bwavard	SNP	tv	*	homalt	99.4965	99.0327	99.9647	19.0358	373475	3648	371220	131	86	65.6489
ckim-vqsr	SNP	*	map_l100_m1_e0	homalt	59.0007	41.8509	99.9646	77.1745	11301	15702	11301	4	3	75.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.2655	94.7083	99.9646	39.5202	5584	312	5645	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.2655	94.7083	99.9646	39.5202	5584	312	5645	2	2	100.0000
ltrigg-rtg1	SNP	ti	HG002complexvar	het	99.8233	99.6823	99.9646	17.0356	313766	1000	313778	111	23	20.7207
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8555	99.7467	99.9646	71.3411	16932	43	16932	6	3	50.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8555	99.7467	99.9646	71.3411	16932	43	16932	6	3	50.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.1401	94.4708	99.9645	35.6743	5570	326	5631	2	2	100.0000

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