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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13451-13500 / 86044 show all
hfeng-pmm2SNPtvHG002complexvarhet
99.7540
99.5389
99.9700
20.7785
150036695149957458
17.7778
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5539
93.3636
99.9700
43.1520
3292234333211
100.0000
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5539
93.3636
99.9700
43.1520
3292234333211
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5842
93.4203
99.9700
43.5033
3294232333411
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5842
93.4203
99.9700
43.5033
3294232333411
100.0000
gduggal-bwavardSNP**homalt
99.5128
99.0597
99.9700
16.7717
1169065110971159771348269
77.2989
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1030
98.2511
99.9699
50.6031
10000178994932
66.6667
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9677
97.9853
99.9699
67.4084
166333421663355
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9677
97.9853
99.9699
67.4084
166333421663355
100.0000
ltrigg-rtg2SNPtvHG002compoundhethomalt
99.4361
98.9079
99.9699
40.5831
335137332111
100.0000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.2496
92.7964
99.9698
39.4554
3272254331211
100.0000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.2496
92.7964
99.9698
39.4554
3272254331211
100.0000
gduggal-bwafbSNPtv*homalt
99.9109
99.8520
99.9697
21.5631
37656555837657911464
56.1404
asubramanian-gatkSNPtvmap_l100_m2_e1homalt
52.3802
35.4870
99.9697
82.0942
33016001330110
0.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.5229
95.1931
99.9696
26.4607
6555331656821
50.0000
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.0017
96.1098
99.9695
34.1855
6547265656321
50.0000
hfeng-pmm1SNPti*het
99.9312
99.8931
99.9694
16.7684
12805211370128047039229
7.3980
ckim-gatkSNPtvmap_l100_m2_e1homalt
82.5549
70.3075
99.9694
70.5594
65402762654020
0.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
eyeh-varpipeSNP**homalt
99.9696
99.9699
99.9693
17.3914
11798073551154702355142
40.0000
hfeng-pmm2INDELD1_5*hetalt
97.1704
94.5242
99.9692
63.6326
9684561972631
33.3333
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4702
95.0930
99.9692
25.5353
6492335650121
50.0000
asubramanian-gatkSNPtvmap_l100_m2_e0homalt
52.1579
35.2833
99.9692
82.1867
32515963325110
0.0000
cchapple-customSNPtvHG002compoundhethomalt
99.4506
98.9374
99.9692
37.6656
335236324611
100.0000
ckim-gatkSNPtvmap_l100_m2_e0homalt
82.4340
70.1324
99.9691
70.6315
64622752646220
0.0000
mlin-fermikitSNP*HG002complexvarhet
98.1632
96.4217
99.9688
17.2653
4488431665744874414023
16.4286
eyeh-varpipeSNPtiHG002compoundhethetalt
99.8980
99.8273
99.9687
18.5958
5781639821
50.0000
gduggal-bwavardINDELI1_5*homalt
95.1435
90.7626
99.9687
33.2973
548465582543431711
64.7059
jmaeng-gatkSNP*map_l150_m1_e0homalt
71.8022
56.0188
99.9683
79.3360
63154958631522
100.0000
jli-customSNPtvHG002complexvar*
99.9252
99.8822
99.9683
21.9781
2458622902457917833
42.3077
ckim-gatkSNPtvmap_l100_m1_e0homalt
82.0884
69.6340
99.9682
68.5726
62972746629720
0.0000
ckim-gatkSNPtvHG002complexvar*
99.5164
99.0689
99.9680
22.5419
24386022922437687828
35.8974
asubramanian-gatkSNPtvmap_l100_m1_e0homalt
51.2011
34.4134
99.9679
81.0990
31125931311210
0.0000
ndellapenna-hhgaSNPti*homalt
99.9286
99.8893
99.9678
16.7330
802149889802170258209
81.0078
ckim-isaacSNPtvsegduphomalt
97.8395
95.7999
99.9678
86.9397
3102136310211
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
98.9572
97.9670
99.9676
71.7050
308464308411
100.0000
gduggal-bwaplatSNPtvmap_sirenhomalt
83.2538
71.3283
99.9675
62.6549
1229749431229343
75.0000
ckim-gatkSNP*HG002complexvar*
99.5695
99.1746
99.9675
19.4723
7481546227748002243101
41.5638
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6756
99.3855
99.9675
53.7536
614638614620
0.0000
rpoplin-dv42SNP**het
99.9475
99.9278
99.9673
19.5765
187223413531872094613268
43.7194
hfeng-pmm3SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9671
99.9671
99.9671
54.5909
60862608622
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9589
99.9507
99.9671
54.6457
60853608522
100.0000
bgallagher-sentieonSNPtvHG002complexvar*
99.9492
99.9313
99.9671
22.0213
2459831692458928131
38.2716
ckim-gatkSNPtiHG002complexvar*
99.5943
99.2243
99.9671
17.9110
504492394450443216674
44.5783
jli-customSNP*HG002complexvarhet
99.9263
99.8859
99.9667
18.4399
46496653146487215554
34.8387
hfeng-pmm2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.5211
95.1923
99.9667
45.0549
2970150299911
100.0000
ckim-isaacSNPti*het
98.7325
97.5284
99.9667
15.6908
125021431683125052541731
7.4341
ltrigg-rtg1SNPtiHG002complexvar*
99.8532
99.7400
99.9667
17.5108
507114132250703416980
47.3373
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333