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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 263 264 265 266 267 268 269 270 271 ... 1720 1721 » 13301-13350 / 86044 show all
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4684	98.9668	99.9751	45.9140	4023	42	4023	1	0	0.0000
astatham-gatk	SNP	tv	*	*	99.5449	99.1184	99.9751	22.0764	961141	8549	961059	239	61	25.5230
astatham-gatk	INDEL	I6_15	HG002compoundhet	hetalt	96.4594	93.1826	99.9750	29.7620	7955	582	7996	2	2	100.0000
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.1067	98.2534	99.9750	43.4659	3994	71	3992	1	0	0.0000
hfeng-pmm3	INDEL	I6_15	*	hetalt	96.4340	93.1353	99.9750	38.6184	7964	587	8004	2	2	100.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9373	99.8997	99.9749	35.9073	3983	4	3983	1	1	100.0000
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9498	99.9248	99.9749	29.7121	3984	3	3978	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9875	100.0000	99.9749	33.2441	3987	0	3987	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8493	99.7241	99.9749	34.2862	3976	11	3976	1	1	100.0000
jli-custom	SNP	ti	HG002complexvar	*	99.9464	99.9180	99.9748	17.5160	508019	417	507979	128	58	45.3125
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7486	99.5235	99.9748	31.2218	3968	19	3962	1	0	0.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8619	99.7492	99.9748	32.5060	3977	10	3969	1	0	0.0000
ckim-gatk	INDEL	I6_15	HG002compoundhet	hetalt	95.9864	92.3041	99.9748	28.2337	7880	657	7921	2	2	100.0000
ckim-vqsr	INDEL	I6_15	HG002compoundhet	hetalt	95.9547	92.2455	99.9747	28.2465	7875	662	7916	2	2	100.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.0368	92.3975	99.9745	38.5038	15435	1270	15656	4	4	100.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.0368	92.3975	99.9745	38.5038	15435	1270	15656	4	4	100.0000
bgallagher-sentieon	SNP	*	HG002complexvar	*	99.9538	99.9332	99.9744	19.0217	753877	504	753722	193	84	43.5233
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7953	99.6169	99.9744	76.0807	3900	15	3900	1	1	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8081	99.6424	99.9744	76.1009	3901	14	3901	1	1	100.0000
mlin-fermikit	SNP	ti	HG002complexvar	het	98.1941	96.4761	99.9743	15.7268	303674	11092	303641	78	14	17.9487
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7311	99.4891	99.9743	79.8583	3895	20	3895	1	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9743	99.9743	99.9743	59.5146	3886	1	3886	1	1	100.0000
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9871	100.0000	99.9743	59.4747	3887	0	3887	1	1	100.0000
cchapple-custom	SNP	*	map_l150_m0_e0	homalt	97.4937	95.1333	99.9743	71.2925	3890	199	3888	1	1	100.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9743	99.9743	99.9743	59.5233	3886	1	3888	1	1	100.0000
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9485	99.9228	99.9742	56.3906	3884	3	3875	1	0	0.0000
raldana-dualsentieon	INDEL	*	*	hetalt	95.3681	91.1677	99.9742	56.5406	23008	2229	23230	6	6	100.0000
rpoplin-dv42	SNP	ti	*	het	99.9511	99.9279	99.9742	18.1937	1280967	924	1280907	330	164	49.6970
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.5113	99.0527	99.9742	29.4879	3869	37	3868	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7163	99.4597	99.9741	59.5798	3866	21	3866	1	1	100.0000
ltrigg-rtg2	SNP	ti	HG002complexvar	homalt	99.9240	99.8739	99.9741	18.1301	193219	244	193117	50	49	98.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6282	99.2848	99.9740	70.9201	3887	28	3839	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.7869	93.7966	99.9740	28.5303	7666	507	7701	2	1	50.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8483	99.7230	99.9740	62.7618	11520	32	11520	3	3	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8483	99.7230	99.9740	62.7618	11520	32	11520	3	3	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6831	99.3940	99.9739	63.4875	11482	70	11482	3	3	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6831	99.3940	99.9739	63.4875	11482	70	11482	3	3	100.0000
hfeng-pmm2	SNP	tv	HG002complexvar	*	99.8387	99.7038	99.9739	21.6976	245423	729	245339	64	21	32.8125
dgrover-gatk	SNP	ti	HG002complexvar	het	99.9452	99.9164	99.9739	17.0118	314503	263	314449	82	32	39.0244
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8141	93.8481	99.9738	26.3153	7597	498	7631	2	1	50.0000
ltrigg-rtg1	SNP	tv	HG002complexvar	homalt	99.9101	99.8465	99.9737	22.5425	94965	146	95003	25	19	76.0000
dgrover-gatk	SNP	tv	HG002complexvar	*	99.9486	99.9236	99.9736	22.0729	245964	188	245873	65	32	49.2308
gduggal-bwaplat	SNP	*	map_siren	homalt	86.1632	75.7053	99.9736	58.6738	41756	13400	41721	11	9	81.8182
jmaeng-gatk	SNP	tv	map_l125_m2_e1	homalt	76.3359	61.7386	99.9733	76.6438	3750	2324	3750	1	1	100.0000
gduggal-bwaplat	SNP	ti	map_l100_m1_e0	homalt	76.7378	62.2661	99.9732	69.0460	11183	6777	11172	3	3	100.0000
eyeh-varpipe	SNP	ti	*	homalt	99.9720	99.9710	99.9731	16.3629	802806	233	790297	213	89	41.7840
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8168	95.7514	99.9731	60.5697	14762	655	14877	4	3	75.0000
jmaeng-gatk	SNP	tv	map_l125_m2_e0	homalt	76.2110	61.5755	99.9730	76.6962	3705	2312	3705	1	1	100.0000

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