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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 262 263 264 265 266 267 268 269 270 ... 1720 1721 » 13251-13300 / 86044 show all
gduggal-bwafb	SNP	ti	*	homalt	99.9234	99.8676	99.9793	17.0184	801976	1063	801993	166	111	66.8675
hfeng-pmm3	INDEL	D1_5	HG002compoundhet	hetalt	96.9544	94.1073	99.9792	56.3965	9614	602	9613	2	0	0.0000
dgrover-gatk	SNP	ti	HG002complexvar	*	99.9530	99.9268	99.9791	17.5262	508064	372	508000	106	56	52.8302
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.2293	98.4908	99.9790	69.4708	4764	73	4764	1	1	100.0000
hfeng-pmm1	SNP	ti	*	*	99.9548	99.9307	99.9789	16.7547	2084065	1446	2084007	440	67	15.2273
ckim-isaac	SNP	*	HG002complexvar	homalt	95.6391	91.6604	99.9788	17.3239	264509	24066	264563	56	45	80.3571
asubramanian-gatk	SNP	*	map_l125_m2_e1	homalt	42.1801	26.7283	99.9787	88.0838	4686	12846	4686	1	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	98.1795	96.4441	99.9786	67.5115	4665	172	4665	1	0	0.0000
egarrison-hhga	SNP	*	*	homalt	99.9329	99.8872	99.9785	18.1960	1178830	1331	1178859	253	173	68.3794
asubramanian-gatk	SNP	*	map_l125_m2_e0	homalt	41.9933	26.5784	99.9784	88.1315	4618	12757	4618	1	0	0.0000
raldana-dualsentieon	SNP	*	HG002complexvar	het	99.8134	99.6490	99.9784	18.1564	463863	1634	463733	100	18	18.0000
raldana-dualsentieon	SNP	tv	HG002complexvar	*	99.8458	99.7136	99.9784	21.7224	245447	705	245362	53	18	33.9623
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	98.1326	96.3537	99.9783	25.7249	4598	174	4610	1	0	0.0000
hfeng-pmm2	SNP	*	HG002complexvar	het	99.8103	99.6430	99.9782	18.0375	463835	1662	463706	101	15	14.8515
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.7726	95.6622	99.9782	25.5368	4565	207	4577	1	0	0.0000
rpoplin-dv42	SNP	ti	*	*	99.9621	99.9459	99.9782	17.6958	2084383	1128	2084320	454	276	60.7930
bgallagher-sentieon	SNP	ti	HG002complexvar	*	99.9558	99.9337	99.9780	17.4939	508099	337	508035	112	53	47.3214
asubramanian-gatk	SNP	tv	HG002complexvar	*	98.0754	96.2442	99.9776	22.6117	236907	9245	236824	53	18	33.9623
ckim-isaac	SNP	ti	map_siren	homalt	82.7288	70.5560	99.9776	44.7961	26752	11164	26753	6	6	100.0000
jmaeng-gatk	SNP	ti	map_l150_m2_e1	homalt	73.3394	57.9098	99.9776	80.4132	4455	3238	4455	1	1	100.0000
hfeng-pmm3	SNP	ti	*	*	99.9596	99.9417	99.9775	17.0194	2084295	1216	2084236	469	46	9.8081
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7343	95.5895	99.9775	64.8179	8886	410	8904	2	1	50.0000
asubramanian-gatk	SNP	tv	map_siren	homalt	67.6949	51.1717	99.9773	68.4987	8822	8418	8819	2	2	100.0000
jmaeng-gatk	SNP	ti	map_l150_m2_e0	homalt	73.2296	57.7731	99.9773	80.4374	4400	3216	4400	1	1	100.0000
dgrover-gatk	SNP	*	HG002complexvar	*	99.9517	99.9260	99.9773	19.0606	753823	558	753668	171	88	51.4620
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.9506	94.1018	99.9772	33.0820	8743	548	8785	2	1	50.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.9506	94.1018	99.9772	33.0820	8743	548	8785	2	1	50.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.8057	91.9684	99.9771	32.4064	12905	1127	13098	3	3	100.0000
ckim-isaac	SNP	tv	HG002complexvar	homalt	95.1060	90.6877	99.9768	19.5838	86254	8857	86277	20	16	80.0000
asubramanian-gatk	SNP	*	map_l125_m1_e0	homalt	40.5846	25.4599	99.9768	87.4504	4304	12601	4304	1	0	0.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.8428	92.0372	99.9767	29.6938	12668	1096	12856	3	3	100.0000
cchapple-custom	SNP	ti	map_l125_m0_e0	homalt	97.6182	95.3685	99.9767	63.8992	4283	208	4282	1	1	100.0000
hfeng-pmm1	SNP	*	*	*	99.9496	99.9227	99.9766	18.0950	3052257	2362	3052118	715	107	14.9650
egarrison-hhga	SNP	tv	*	homalt	99.9252	99.8738	99.9766	20.9039	376647	476	376656	88	60	68.1818
gduggal-bwaplat	SNP	*	map_l100_m2_e1	homalt	76.1334	61.4729	99.9766	72.2874	17087	10709	17075	4	4	100.0000
gduggal-bwaplat	SNP	*	map_l100_m2_e0	homalt	75.9766	61.2688	99.9763	72.3553	16863	10660	16851	4	4	100.0000
ckim-vqsr	SNP	tv	HG002complexvar	het	98.9859	98.0150	99.9763	22.4456	147739	2992	147662	35	14	40.0000
ckim-isaac	SNP	ti	func_cds	het	99.5275	99.0828	99.9763	20.1440	8426	78	8426	2	0	0.0000
astatham-gatk	SNP	ti	*	het	99.3889	98.8086	99.9762	18.5890	1266618	15273	1266563	302	60	19.8675
gduggal-bwaplat	SNP	ti	map_siren	homalt	87.4388	77.6954	99.9762	56.7476	29459	8457	29428	7	6	85.7143
gduggal-bwafb	SNP	*	*	homalt	99.9194	99.8626	99.9762	18.5273	1178541	1621	1178572	280	175	62.5000
rpoplin-dv42	SNP	ti	HG002complexvar	het	99.9002	99.8243	99.9761	16.8206	314213	553	314152	75	55	73.3333
ltrigg-rtg2	SNP	*	HG002complexvar	homalt	99.9218	99.8676	99.9761	19.6026	288192	382	288118	69	68	98.5507
jmaeng-gatk	SNP	ti	map_l150_m1_e0	homalt	72.2900	56.6125	99.9759	78.8887	4148	3179	4148	1	1	100.0000
asubramanian-gatk	SNP	tv	HG002complexvar	het	98.1875	96.4619	99.9759	22.1458	145398	5333	145329	35	10	28.5714
gduggal-bwaplat	SNP	tv	*	homalt	98.6202	97.3009	99.9757	22.0523	366944	10179	366871	89	82	92.1348
hfeng-pmm3	SNP	*	*	*	99.9548	99.9339	99.9756	18.3516	3052601	2018	3052460	744	76	10.2151
jli-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8769	99.7786	99.9754	44.9525	4056	9	4056	1	1	100.0000
rpoplin-dv42	SNP	tv	*	homalt	99.9702	99.9650	99.9753	20.9652	376991	132	376970	93	51	54.8387
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6545	99.3358	99.9752	49.3288	4038	27	4038	1	1	100.0000

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