PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13201-13250 / 86044 show all
jlack-gatkSNPtiHG002complexvarhomalt
99.9491
99.9163
99.9819
18.2375
1933011621932903532
91.4286
gduggal-bwaplatSNP*map_l100_m1_e0homalt
75.5140
60.6673
99.9817
70.3269
16382106211637033
100.0000
asubramanian-gatkSNP*map_l100_m2_e1homalt
56.2073
39.0920
99.9816
79.6586
10866169301086620
0.0000
jlack-gatkSNP*HG002complexvarhomalt
99.9456
99.9096
99.9816
19.7398
2883132612882845346
86.7925
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8348
99.6884
99.9816
59.7111
10877341087421
50.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8394
99.6976
99.9816
59.7625
10878331087521
50.0000
raldana-dualsentieonSNPtiHG002complexvarhet
99.8369
99.6928
99.9815
16.7345
313799967313748589
15.5172
hfeng-pmm1SNPtvHG002complexvarhet
99.7636
99.5469
99.9813
20.8221
150048683149969289
32.1429
asubramanian-gatkSNP*map_l100_m2_e0homalt
55.9994
38.8911
99.9813
79.7534
10704168191070420
0.0000
gduggal-snapplatSNPtvmap_l125_m2_e1homalt
93.5797
87.9486
99.9813
71.5146
5342732534210
0.0000
hfeng-pmm1INDELI1_5*hetalt
97.1621
94.4975
99.9812
62.7564
105796161063722
100.0000
hfeng-pmm3INDELI1_5*hetalt
97.1290
94.4350
99.9812
61.2138
105726231063222
100.0000
hfeng-pmm2INDELI1_5*hetalt
97.2753
94.7119
99.9812
62.6532
106035921066222
100.0000
jlack-gatkSNPtvHG002complexvarhomalt
99.9385
99.8959
99.9811
22.6324
9501299949941814
77.7778
gduggal-snapplatSNPtvmap_l125_m2_e0homalt
93.5527
87.9009
99.9811
71.5032
5289728529010
0.0000
gduggal-snapplatSNPtifunc_cdshomalt
99.7435
99.5071
99.9810
20.2128
524926524911
100.0000
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.2699
96.6164
99.9810
27.1104
5254184526610
0.0000
gduggal-bwaplatSNP**homalt
98.9364
97.9135
99.9810
18.7279
1155537246241155217220194
88.1818
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9550
96.0096
99.9809
26.3336
5221217523310
0.0000
ckim-dragenINDELI1_5*hetalt
96.2953
92.8718
99.9809
60.6438
103977981045122
100.0000
ckim-dragenINDELI1_5HG002compoundhethetalt
96.3036
92.8872
99.9808
55.1746
103827951043222
100.0000
gduggal-snapvardSNPtifunc_cdshomalt
99.6385
99.2986
99.9808
20.4816
523837521711
100.0000
hfeng-pmm3SNPtvHG002complexvarhet
99.7826
99.5854
99.9807
20.9857
150106625150027296
20.6897
astatham-gatkSNP***
99.5934
99.2091
99.9807
19.0428
3030461241583030315584162
27.7397
asubramanian-gatkSNP*map_l100_m1_e0homalt
55.1894
38.1143
99.9806
78.4662
10292167111029220
0.0000
gduggal-snapplatSNPtvmap_l125_m1_e0homalt
93.4557
87.7304
99.9806
69.1888
5141719514210
0.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9017
99.8231
99.9803
53.8406
10160181016022
100.0000
ckim-vqsrSNP*HG002complexvarhet
99.0965
98.2281
99.9803
19.3098
45724982484571249032
35.5556
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9703
99.9604
99.9802
50.4100
1009841009822
100.0000
ltrigg-rtg1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8066
99.6337
99.9801
44.8476
10065371006021
50.0000
ltrigg-rtg2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7618
99.5445
99.9801
51.1635
20107922008143
75.0000
ltrigg-rtg2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7370
99.4951
99.9801
43.3493
10051511004521
50.0000
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7866
99.5939
99.9801
57.0879
10056411003622
100.0000
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7668
99.5543
99.9801
61.8690
10052451005222
100.0000
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8760
99.7722
99.9801
53.5072
10074231003321
50.0000
ltrigg-rtg2SNPtvHG002complexvarhomalt
99.9174
99.8549
99.9800
22.4289
94973138950011919
100.0000
hfeng-pmm2SNPtvHG002complexvarhomalt
99.9732
99.9664
99.9800
23.0303
9507932950741913
68.4211
asubramanian-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4277
98.8814
99.9800
49.5688
9989113999822
100.0000
hfeng-pmm1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9045
95.9136
99.9799
60.6514
147876301490532
66.6667
hfeng-pmm2SNP*HG002complexvar*
99.8743
99.7689
99.9799
18.8346
752638174375249515159
39.0728
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.9528
97.9466
99.9799
52.0162
9969209997021
50.0000
ckim-isaacSNPtiHG002complexvarhomalt
95.8992
92.1386
99.9798
16.1839
178255152091782863629
80.5556
hfeng-pmm3INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6708
95.4660
99.9798
58.6016
147186991483532
66.6667
hfeng-pmm1INDELD1_5*hetalt
97.2784
94.7194
99.9795
63.7385
9704541974821
50.0000
asubramanian-gatkSNPtiHG002complexvarhet
98.4409
96.9492
99.9794
17.3446
30516396033051136321
33.3333
ltrigg-rtg2INDELD1_5*homalt
99.7038
99.4298
99.9794
54.3049
4864727948525109
90.0000
hfeng-pmm3INDELD1_5*hetalt
96.9633
94.1240
99.9794
61.2573
9643602968620
0.0000
egarrison-hhgaSNPti*homalt
99.9365
99.8935
99.9794
16.8582
802183855802203165113
68.4848
hfeng-pmm1INDELD1_5HG002compoundhethetalt
97.2704
94.7044
99.9793
59.1395
9675541967521
50.0000
hfeng-pmm2INDELD1_5HG002compoundhethetalt
97.1670
94.5086
99.9793
58.9151
9655561965520
0.0000