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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 260 261 262 263 264 265 266 267 268 ... 1720 1721 » 13151-13200 / 86044 show all
ltrigg-rtg1	SNP	*	*	homalt	99.9664	99.9480	99.9848	17.4153	1179543	614	1179482	179	154	86.0335
jmaeng-gatk	SNP	tv	map_l100_m2_e1	homalt	82.6342	70.4150	99.9847	69.7916	6550	2752	6550	1	1	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.3545	94.8591	99.9847	25.8525	6532	354	6544	1	0	0.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.9479	95.9924	99.9847	32.9893	6539	273	6556	1	0	0.0000
astatham-gatk	SNP	tv	HG002complexvar	*	99.1122	98.2547	99.9847	22.3181	241856	4296	241769	37	21	56.7568
raldana-dualsentieon	SNP	ti	HG002complexvar	*	99.8917	99.7990	99.9846	17.3582	507414	1022	507354	78	29	37.1795
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.3002	94.7561	99.9846	24.3136	6469	358	6477	1	0	0.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.5390	95.2102	99.9846	25.1466	6500	327	6509	1	0	0.0000
jmaeng-gatk	SNP	tv	map_l100_m2_e0	homalt	82.5067	70.2301	99.9845	69.8682	6471	2743	6471	1	1	100.0000
jmaeng-gatk	SNP	*	HG002complexvar	homalt	99.3008	98.6263	99.9845	20.0307	284610	3964	284586	44	39	88.6364
hfeng-pmm1	SNP	*	HG002complexvar	het	99.8138	99.6436	99.9845	18.0286	463838	1659	463708	72	19	26.3889
cchapple-custom	SNP	*	map_l125_m0_e0	homalt	97.7145	95.5453	99.9844	64.7518	6413	299	6411	1	1	100.0000
hfeng-pmm3	SNP	tv	HG002complexvar	*	99.8576	99.7315	99.9841	21.7544	245491	661	245404	39	15	38.4615
jmaeng-gatk	SNP	tv	map_l100_m1_e0	homalt	82.1629	69.7335	99.9841	67.6746	6306	2737	6306	1	1	100.0000
jmaeng-gatk	SNP	tv	HG002complexvar	homalt	99.2171	98.4618	99.9840	23.0284	93648	1463	93634	15	13	86.6667
ckim-vqsr	SNP	*	HG002complexvar	*	98.7826	97.6098	99.9840	19.7255	736350	18031	736201	118	58	49.1525
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8722	99.7607	99.9840	43.9807	6253	15	6253	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8642	99.7447	99.9840	43.8336	6252	16	6252	1	1	100.0000
hfeng-pmm2	SNP	ti	HG002complexvar	homalt	99.9798	99.9757	99.9840	18.5051	193416	47	193407	31	31	100.0000
ckim-dragen	SNP	ti	HG002complexvar	homalt	99.9527	99.9214	99.9840	18.3095	193311	152	193417	31	31	100.0000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3498	98.7237	99.9839	45.5999	6188	80	6193	1	1	100.0000
ltrigg-rtg1	SNP	tv	*	homalt	99.9663	99.9491	99.9836	19.8090	376929	192	376963	62	42	67.7419
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9754	99.9671	99.9836	54.9478	6086	2	6086	1	1	100.0000
asubramanian-gatk	SNP	ti	HG002complexvar	*	98.3380	96.7457	99.9835	17.8536	491890	16546	491830	81	36	44.4444
hfeng-pmm3	SNP	ti	HG002complexvar	het	99.8511	99.7192	99.9834	16.8098	313882	884	313832	52	10	19.2308
gduggal-bwaplat	SNP	ti	*	homalt	99.0843	98.2012	99.9834	17.0820	788593	14445	788346	131	112	85.4962
ckim-vqsr	SNP	ti	map_siren	homalt	77.6182	63.4297	99.9834	60.5065	24050	13866	24044	4	4	100.0000
hfeng-pmm1	SNP	tv	HG002complexvar	*	99.8458	99.7087	99.9833	21.6860	245435	717	245349	41	20	48.7805
astatham-gatk	SNP	ti	*	*	99.6161	99.2515	99.9833	17.5605	2069900	15611	2069836	345	101	29.2754
hfeng-pmm2	INDEL	*	HG002compoundhet	hetalt	96.9221	94.0429	99.9832	52.1234	23680	1500	23795	4	2	50.0000
hfeng-pmm1	INDEL	*	HG002compoundhet	hetalt	96.9242	94.0469	99.9832	52.2156	23681	1499	23796	4	3	75.0000
jli-custom	SNP	tv	HG002complexvar	homalt	99.9542	99.9254	99.9832	22.8543	95040	71	95029	16	11	68.7500
hfeng-pmm3	INDEL	*	HG002compoundhet	hetalt	96.7848	93.7847	99.9831	50.6733	23615	1565	23731	4	2	50.0000
hfeng-pmm2	SNP	ti	HG002complexvar	*	99.8914	99.8002	99.9829	17.3851	507420	1016	507361	87	38	43.6782
astatham-gatk	SNP	tv	HG002complexvar	het	98.5778	97.2116	99.9829	21.9634	146528	4203	146456	25	11	44.0000
hfeng-pmm2	SNP	*	HG002complexvar	homalt	99.9776	99.9726	99.9827	20.0544	288495	79	288481	50	44	88.0000
raldana-dualsentieon	SNP	*	HG002complexvar	*	99.8769	99.7713	99.9826	18.8281	752656	1725	752511	131	47	35.8779
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8455	99.7089	99.9825	55.0685	17127	50	17124	3	2	66.6667
hfeng-pmm3	SNP	*	HG002complexvar	het	99.8290	99.6758	99.9825	18.2080	463988	1509	463859	81	16	19.7531
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8513	99.7206	99.9825	55.1444	17129	48	17126	3	2	66.6667
jli-custom	SNP	*	HG002complexvar	homalt	99.9614	99.9404	99.9823	19.9145	288402	172	288385	51	37	72.5490
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.3380	94.8299	99.9823	61.6765	5631	307	5659	1	1	100.0000
hfeng-pmm2	SNP	ti	HG002complexvar	het	99.8373	99.6928	99.9822	16.6591	313799	967	313749	56	7	12.5000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7960	99.6105	99.9822	54.2557	11252	44	11220	2	2	100.0000
ckim-vqsr	SNP	ti	HG002complexvar	het	99.1493	98.3302	99.9822	17.7224	309510	5256	309462	55	18	32.7273
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.6618	93.5550	99.9821	38.6326	5516	380	5573	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6618	93.5550	99.9821	38.6326	5516	380	5573	1	1	100.0000
rpoplin-dv42	SNP	*	*	homalt	99.9769	99.9716	99.9821	18.2100	1179826	335	1179802	211	157	74.4076
ckim-vqsr	SNP	tv	HG002complexvar	*	98.6339	97.3216	99.9820	22.8566	239559	6593	239468	43	20	46.5116
jli-custom	SNP	ti	HG002complexvar	homalt	99.9648	99.9478	99.9819	18.3860	193362	101	193356	35	26	74.2857

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